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Difference between revisions of "TSS:Hg 101138.1"

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Line 3: Line 3:
 
|EPB41LO=
 
|EPB41LO=
 
|P410=
 
|P410=
|all_trans=AK297722:0 AK223597:0 NM_001244959:-5 NM_174938:-5 ENST00000304195.7:-10 uc004ams.3:-10 BC041376:-10 EF560742:20 ENST00000376438.5:-118 uc004amr.2:-118 KJ904084:122 AK094281:170
+
|all_trans=ENST00000304195.8:0 NM_001244959:0 NM_174938:0 AK297722:0 AK223597:0 BC041376:-10 EF560742:20 ENST00000376438.5:-118 KJ904084:122 AK094281:170
 
|chr=chr9
 
|chr=chr9
 
|cpg_percent=0.145
 
|cpg_percent=0.145
 
|distance=0
 
|distance=0
|distance_to_tss=67
+
|distance_to_tss=35
 
|end=83538428
 
|end=83538428
 
|end_of_center_position=83538366
 
|end_of_center_position=83538366
 
|entrez_id=257019
 
|entrez_id=257019
 
|gc_percent=0.766169
 
|gc_percent=0.766169
|gene_alias=4.1O
+
|gene_alias=4.1O{{!}}EPB41L4O{{!}}EPB41LO{{!}}P410
 
|gene_description=FERM domain containing 3
 
|gene_description=FERM domain containing 3
 
|gene_id=257019
 
|gene_id=257019
Line 22: Line 22:
 
|hgnc_mgi_id=HGNC:24125
 
|hgnc_mgi_id=HGNC:24125
 
|nearest_ensembl=ENSG00000172159
 
|nearest_ensembl=ENSG00000172159
|nearest_promoter_id=NM_001244959
+
|nearest_promoter_id=NM_174938
 
|nearest_refseq=NM_174938
 
|nearest_refseq=NM_174938
 
|nearest_unigene=Hs.127535
 
|nearest_unigene=Hs.127535
|num_trans=12
+
|num_trans=10
 
|species=human
 
|species=human
 
|start=83538303
 
|start=83538303
 
|start_of_center_position=83538365
 
|start_of_center_position=83538365
 
|strand=-
 
|strand=-
|transcript_name=AK297722 AK223597
+
|transcript_name=ENST00000304195.8 NM_001244959 NM_174938 AK297722 AK223597
 
|tss_classification=yes
 
|tss_classification=yes
 
|tss_id=hg_101138.1
 
|tss_id=hg_101138.1
 
|tss_score=1
 
|tss_score=1
|uniprot_id=
+
|uniprot_id=A2A2Y4
 
}}
 
}}

Revision as of 16:33, 15 June 2021

Basic information about the TSS


TSS ID:hg_101138.1
Species:human
Chr:chr9
TSS Classification:yes
Start:83538303
End:83538428
Strand:-
TSS Score:1
Start of the center position in the TSS region:83538365
End of the center position in the TSS region:83538366



Gene and protein annotation


Transcript_name:ENST00000304195.8 NM_001244959 NM_174938 AK297722 AK223597
Distance:0
GeneID:257019
HGNC/MGI_ID:HGNC:24125
UniProt_ID:A2A2Y4
Gene_name:FERM domain containing 3
Gene_symbol:FRMD3
Gene_synonyms:EPB41L4O MGC20553
Gene_source:HGNC:24125



Transcript annotation


Transcript_name:ENST00000304195.8 NM_001244959 NM_174938 AK297722 AK223597
Distance:0
Num_trans:10
All_trans:ENST00000304195.8:0 NM_001244959:0 NM_174938:0 AK297722:0 AK223597:0 BC041376:-10 EF560742:20 ENST00000376438.5:-118 KJ904084:122 AK094281:170



TATA-Box annotation


Distance to TSS:35
Nearest PromoterID:NM_174938
Entrez ID:257019
Nearest Unigene:Hs.127535
Nearest Refseq:NM_174938
Nearest Ensembl:ENSG00000172159
Gene Name:FERM domain containing 3
Gene Alias:4.1O|EPB41L4O|EPB41LO|P410
Gene Description:FERM domain containing 3
Gene Type:protein-coding
CpG%:0.145
GC%:0.766169
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):