Difference between revisions of "TSS:Hg 101153.1"
From referenceTSS
| Line 4: | Line 4: | ||
|UBQN= | |UBQN= | ||
|XDRP1= | |XDRP1= | ||
| − | |all_trans= | + | |all_trans=LF384925:-4 MA620502:-4 AK074535:11 ENST00000376395.9:256 NM_013438:256 NM_053067:256 AL136643:257 AK027556:262 BC039294:270 BC017289:270 AK027576:271 ENST00000257468.11:280 BC010066:281 AB035275:426 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.075 | |cpg_percent=0.075 | ||
|distance=-4 | |distance=-4 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-100 |
|end=83708249 | |end=83708249 | ||
|end_of_center_position=83708232 | |end_of_center_position=83708232 | ||
| − | |entrez_id= | + | |entrez_id=105376114 |
|gc_percent=0.557214 | |gc_percent=0.557214 | ||
| − | |gene_alias= | + | |gene_alias=- |
| − | |gene_description= | + | |gene_description=uncharacterized LOC105376114 |
|gene_id=29979 | |gene_id=29979 | ||
| − | |gene_name= | + | |gene_name=LOC105376114 |
|gene_source=HGNC:12508 | |gene_source=HGNC:12508 | ||
|gene_symbol=UBQLN1 | |gene_symbol=UBQLN1 | ||
|gene_synonyms=DA41 DSK2 PLIC-1 XDRP1 | |gene_synonyms=DA41 DSK2 PLIC-1 XDRP1 | ||
| − | |gene_type= | + | |gene_type=ncRNA |
|hgnc_mgi_id=HGNC:12508 | |hgnc_mgi_id=HGNC:12508 | ||
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSG00000254473 |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_135840 |
| − | |nearest_refseq= | + | |nearest_refseq=NR_135839 |
|nearest_unigene=Hs.9589 | |nearest_unigene=Hs.9589 | ||
|num_trans=14 | |num_trans=14 | ||
| Line 31: | Line 31: | ||
|start_of_center_position=83708231 | |start_of_center_position=83708231 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF384925 MA620502 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_101153.1 | |tss_id=hg_101153.1 | ||
Latest revision as of 16:33, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 83708231 |
|---|---|
| End of the center position in the TSS region: | 83708232 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF384925 MA620502 |
|---|---|
| Distance: | -4 |
| Num_trans: | 14 |
| All_trans: | LF384925:-4 MA620502:-4 AK074535:11 ENST00000376395.9:256 NM_013438:256 NM_053067:256 AL136643:257 AK027556:262 BC039294:270 BC017289:270 AK027576:271 ENST00000257468.11:280 BC010066:281 AB035275:426 |
TATA-Box annotation
| Distance to TSS: | -100 |
|---|---|
| Nearest PromoterID: | NR_135840 |
| Entrez ID: | 105376114 |
| Nearest Unigene: | Hs.9589 |
| Nearest Refseq: | NR_135839 |
| Nearest Ensembl: | ENSG00000254473 |
| Gene Name: | LOC105376114 |
| Gene Alias: | - |
| Gene Description: | uncharacterized LOC105376114 |
| Gene Type: | ncRNA |
| CpG%: | 0.075 |
| GC%: | 0.557214 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
