Difference between revisions of "TSS:Hg 101228.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000298743. | + | |all_trans=ENST00000298743.9:20 NM_002048:20 LF214003:20 MA449580:20 LF209815:-130 MA445392:-130 L13698:337 LF212539:-471 MA448116:-471 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.08 | |cpg_percent=0.08 | ||
| − | |distance= | + | |distance=20 |
| − | |distance_to_tss=- | + | |distance_to_tss=-30 |
|end=86947547 | |end=86947547 | ||
|end_of_center_position=86947537 | |end_of_center_position=86947537 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_002048 | |nearest_refseq=NM_002048 | ||
|nearest_unigene=Hs.65029 | |nearest_unigene=Hs.65029 | ||
| − | |num_trans= | + | |num_trans=9 |
|species=human | |species=human | ||
|start=86947525 | |start=86947525 | ||
|start_of_center_position=86947536 | |start_of_center_position=86947536 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-1(GTATTTAAAGCC,+,0.00) |
| − | |transcript_name=ENST00000298743. | + | |transcript_name=ENST00000298743.9 NM_002048 LF214003 MA449580 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_101228.1 | |tss_id=hg_101228.1 | ||
Revision as of 16:35, 15 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 86947536 |
|---|---|
| End of the center position in the TSS region: | 86947537 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000298743.9 NM_002048 LF214003 MA449580 |
|---|---|
| Distance: | 20 |
| Num_trans: | 9 |
| All_trans: | ENST00000298743.9:20 NM_002048:20 LF214003:20 MA449580:20 LF209815:-130 MA445392:-130 L13698:337 LF212539:-471 MA448116:-471 |
TATA-Box annotation
| Distance to TSS: | -30 |
|---|---|
| Nearest PromoterID: | NM_002048 |
| Entrez ID: | 2619 |
| Nearest Unigene: | Hs.65029 |
| Nearest Refseq: | NM_002048 |
| Nearest Ensembl: | ENSG00000180447 |
| Gene Name: | growth arrest specific 1 |
| Gene Alias: | - |
| Gene Description: | growth arrest specific 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.08 |
| GC%: | 0.606965 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -1(GTATTTAAAGCC,+,0.00) |
