Difference between revisions of "TSS:Hg 101278.1"
From referenceTSS
| Line 3: | Line 3: | ||
|RAI= | |RAI= | ||
|SHCC= | |SHCC= | ||
| − | |all_trans=ENST00000375835. | + | |all_trans=BC026314:0 ENST00000375835.9:-35 NM_016848:-35 D84361:121 DQ896663:300 KU176125:301 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=46 |
|end=89178783 | |end=89178783 | ||
|end_of_center_position=89178772 | |end_of_center_position=89178772 | ||
|entrez_id=53358 | |entrez_id=53358 | ||
|gc_percent=0.487562 | |gc_percent=0.487562 | ||
| − | |gene_alias=N-Shc | + | |gene_alias=N-Shc{{!}}NSHC{{!}}RAI{{!}}SHCC |
|gene_description=SHC adaptor protein 3 | |gene_description=SHC adaptor protein 3 | ||
|gene_id=53358 | |gene_id=53358 | ||
| − | |gene_name=SHC | + | |gene_name=SHC adaptor protein 3 |
|gene_source=HGNC:18181 | |gene_source=HGNC:18181 | ||
|gene_symbol=SHC3 | |gene_symbol=SHC3 | ||
| Line 30: | Line 30: | ||
|start_of_center_position=89178771 | |start_of_center_position=89178771 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=BC026314 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_101278.1 | |tss_id=hg_101278.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 16:36, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 89178771 |
|---|---|
| End of the center position in the TSS region: | 89178772 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC026314 |
|---|---|
| Distance: | 0 |
| Num_trans: | 6 |
| All_trans: | BC026314:0 ENST00000375835.9:-35 NM_016848:-35 D84361:121 DQ896663:300 KU176125:301 |
TATA-Box annotation
| Distance to TSS: | 46 |
|---|---|
| Nearest PromoterID: | NM_016848 |
| Entrez ID: | 53358 |
| Nearest Unigene: | Hs.292737 |
| Nearest Refseq: | NM_016848 |
| Nearest Ensembl: | ENSG00000148082 |
| Gene Name: | SHC adaptor protein 3 |
| Gene Alias: | N-Shc|NSHC|RAI|SHCC |
| Gene Description: | SHC adaptor protein 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.487562 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
