Difference between revisions of "TSS:Hg 101418.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|NOP132= | |NOP132= | ||
| − | |all_trans=ENST00000358855.8:0 ENST00000545444.5:0 ENST00000421075.6:0 | + | |all_trans=ENST00000358855.8:0 ENST00000545444.5:0 ENST00000421075.6:0 NM_001330722:0 NR_046106:0 NM_001256394:0 LF209787:0 MA445364:0 AB105104:22 ENST00000536624.5:-24 LF331616:57 MA567193:57 ENST00000411621.6:193 ENST00000433029.6:208 LF331617:214 MA567194:214 ENST00000544321.5:217 ENST00000432670.6:220 ENST00000538215.5:225 AK297355:227 ENST00000442668.7:228 ENST00000536593.5:228 ENST00000545558.5:228 ENST00000543985.5:228 ENST00000535649.1:228 NM_017948:228 BC146810:228 AK307408:228 AK001049:228 ENST00000542573.5:230 ENST00000434228.5:235 BC008491:235 ENST00000544867.5:240 CR627363:240 ENST00000543260.5:242 ENST00000542053.5:245 ENST00000542613.5:247 ENST00000445919.6:266 ENST00000482475.6:286 LF331618:500 MA567195:500 |
|bA62C3.3= | |bA62C3.3= | ||
|bA62C3.4= | |bA62C3.4= | ||
| Line 12: | Line 12: | ||
|entrez_id=55035 | |entrez_id=55035 | ||
|gc_percent=0.547264 | |gc_percent=0.547264 | ||
| − | |gene_alias=C9orf34 | + | |gene_alias=C9orf34{{!}}NOP132{{!}}bA62C3.3{{!}}bA62C3.4 |
|gene_description=nucleolar protein 8 | |gene_description=nucleolar protein 8 | ||
|gene_id=55035 | |gene_id=55035 | ||
| Line 22: | Line 22: | ||
|hgnc_mgi_id=HGNC:23387 | |hgnc_mgi_id=HGNC:23387 | ||
|nearest_ensembl=ENSG00000198000 | |nearest_ensembl=ENSG00000198000 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_046106 |
|nearest_refseq=NM_017948 | |nearest_refseq=NM_017948 | ||
|nearest_unigene=Hs.442199 | |nearest_unigene=Hs.442199 | ||
| − | |num_trans= | + | |num_trans=41 |
|species=human | |species=human | ||
|start=92325577 | |start=92325577 | ||
|start_of_center_position=92325594 | |start_of_center_position=92325594 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000358855.8 ENST00000545444.5 ENST00000421075.6 NM_001256394 | + | |transcript_name=ENST00000358855.8 ENST00000545444.5 ENST00000421075.6 NM_001330722 NR_046106 NM_001256394 LF209787 MA445364 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_101418.1 | |tss_id=hg_101418.1 | ||
Revision as of 16:39, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 92325594 |
|---|---|
| End of the center position in the TSS region: | 92325595 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000358855.8 ENST00000545444.5 ENST00000421075.6 NM_001330722 NR_046106 NM_001256394 LF209787 MA445364 |
|---|---|
| Distance: | 0 |
| Num_trans: | 41 |
| All_trans: | ENST00000358855.8:0 ENST00000545444.5:0 ENST00000421075.6:0 NM_001330722:0 NR_046106:0 NM_001256394:0 LF209787:0 MA445364:0 AB105104:22 ENST00000536624.5:-24 LF331616:57 MA567193:57 ENST00000411621.6:193 ENST00000433029.6:208 LF331617:214 MA567194:214 ENST00000544321.5:217 ENST00000432670.6:220 ENST00000538215.5:225 AK297355:227 ENST00000442668.7:228 ENST00000536593.5:228 ENST00000545558.5:228 ENST00000543985.5:228 ENST00000535649.1:228 NM_017948:228 BC146810:228 AK307408:228 AK001049:228 ENST00000542573.5:230 ENST00000434228.5:235 BC008491:235 ENST00000544867.5:240 CR627363:240 ENST00000543260.5:242 ENST00000542053.5:245 ENST00000542613.5:247 ENST00000445919.6:266 ENST00000482475.6:286 LF331618:500 MA567195:500 |
TATA-Box annotation
| Distance to TSS: | -1 |
|---|---|
| Nearest PromoterID: | NR_046106 |
| Entrez ID: | 55035 |
| Nearest Unigene: | Hs.442199 |
| Nearest Refseq: | NM_017948 |
| Nearest Ensembl: | ENSG00000198000 |
| Gene Name: | nucleolar protein 8 |
| Gene Alias: | C9orf34|NOP132|bA62C3.3|bA62C3.4 |
| Gene Description: | nucleolar protein 8 |
| Gene Type: | protein-coding |
| CpG%: | 0.055 |
| GC%: | 0.547264 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
