Difference between revisions of "TSS:Hg 101433.1"
From referenceTSS
| Line 3: | Line 3: | ||
|PLAP1= | |PLAP1= | ||
|SLRR1C= | |SLRR1C= | ||
| − | |all_trans=AK172737:23 AK304501:30 AK027359:49 AK308107:-60 AY029191:-75 AY358329:-81 ENST00000375544.7:-92 | + | |all_trans=ENST00000650794.1:23 AK172737:23 AK304501:30 ENST00000375543.2:49 AK027359:49 AK308107:-60 ENST00000651738.1:-63 AY029191:-75 AY358329:-81 ENST00000375544.7:-92 NM_001193335:-92 NM_017680:-92 BC063114:-92 BC022059:-92 LF209785:-140 MA445362:-140 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0 | |cpg_percent=0 | ||
|distance=23 | |distance=23 | ||
| − | |distance_to_tss= | + | |distance_to_tss=98 |
|end=92482414 | |end=92482414 | ||
|end_of_center_position=92482408 | |end_of_center_position=92482408 | ||
|entrez_id=54829 | |entrez_id=54829 | ||
|gc_percent=0.38806 | |gc_percent=0.38806 | ||
| − | |gene_alias=OS3 | + | |gene_alias=OS3{{!}}PLAP-1{{!}}PLAP1{{!}}SLRR1C |
|gene_description=asporin | |gene_description=asporin | ||
|gene_id=54829 | |gene_id=54829 | ||
| Line 18: | Line 18: | ||
|gene_source=HGNC:14872 | |gene_source=HGNC:14872 | ||
|gene_symbol=ASPN | |gene_symbol=ASPN | ||
| − | |gene_synonyms=FLJ20129 | + | |gene_synonyms=FLJ20129 PLAP-1 SLRR1C |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:14872 | |hgnc_mgi_id=HGNC:14872 | ||
|nearest_ensembl=ENSG00000106819 | |nearest_ensembl=ENSG00000106819 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_017680 |
|nearest_refseq=NM_017680 | |nearest_refseq=NM_017680 | ||
|nearest_unigene=Hs.435655 | |nearest_unigene=Hs.435655 | ||
| − | |num_trans= | + | |num_trans=16 |
|species=human | |species=human | ||
|start=92482401 | |start=92482401 | ||
|start_of_center_position=92482407 | |start_of_center_position=92482407 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=AK172737 | + | |transcript_name=ENST00000650794.1 AK172737 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_101433.1 | |tss_id=hg_101433.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=A0A494C1J0 |
}} | }} | ||
Revision as of 16:40, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 92482407 |
|---|---|
| End of the center position in the TSS region: | 92482408 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000650794.1 AK172737 |
|---|---|
| Distance: | 23 |
| Num_trans: | 16 |
| All_trans: | ENST00000650794.1:23 AK172737:23 AK304501:30 ENST00000375543.2:49 AK027359:49 AK308107:-60 ENST00000651738.1:-63 AY029191:-75 AY358329:-81 ENST00000375544.7:-92 NM_001193335:-92 NM_017680:-92 BC063114:-92 BC022059:-92 LF209785:-140 MA445362:-140 |
TATA-Box annotation
| Distance to TSS: | 98 |
|---|---|
| Nearest PromoterID: | NM_017680 |
| Entrez ID: | 54829 |
| Nearest Unigene: | Hs.435655 |
| Nearest Refseq: | NM_017680 |
| Nearest Ensembl: | ENSG00000106819 |
| Gene Name: | asporin |
| Gene Alias: | OS3|PLAP-1|PLAP1|SLRR1C |
| Gene Description: | asporin |
| Gene Type: | protein-coding |
| CpG%: | 0 |
| GC%: | 0.38806 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
