Difference between revisions of "TSS:Hg 101497.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000423591.5:0 ENST00000476484.5:0 | + | |all_trans=ENST00000649557.1:0 ENST00000423591.5:0 ENST00000476484.5:0 NR_136238:0 NR_136237:0 NR_136236:0 NR_136235:0 NR_136234:0 NR_136233:0 NR_136232:0 NM_001322224:0 BC046183:0 ENST00000650398.1:17 ENST00000479094.5:23 ENST00000523407.1:23 BC038803:23 ENST00000520403.1:35 BC037551:50 BC063650:50 BC080634:73 DQ580956:243 ENST00000483056.5:339 ENST00000428152.1:433 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.175 | |cpg_percent=0.175 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=25 |
|end=93451619 | |end=93451619 | ||
|end_of_center_position=93451583 | |end_of_center_position=93451583 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:23389 | |hgnc_mgi_id=HGNC:23389 | ||
|nearest_ensembl=ENSG00000188938 | |nearest_ensembl=ENSG00000188938 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_136237 |
|nearest_refseq=NM_198841 | |nearest_refseq=NM_198841 | ||
|nearest_unigene=Hs.350364 | |nearest_unigene=Hs.350364 | ||
| − | |num_trans= | + | |num_trans=23 |
|species=human | |species=human | ||
|start=93451546 | |start=93451546 | ||
|start_of_center_position=93451582 | |start_of_center_position=93451582 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000423591.5 ENST00000476484.5 | + | |transcript_name=ENST00000649557.1 ENST00000423591.5 ENST00000476484.5 NR_136238 NR_136237 NR_136236 NR_136235 NR_136234 NR_136233 NR_136232 NM_001322224 BC046183 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_101497.1 | |tss_id=hg_101497.1 | ||
Revision as of 16:41, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 93451582 |
|---|---|
| End of the center position in the TSS region: | 93451583 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000649557.1 ENST00000423591.5 ENST00000476484.5 NR_136238 NR_136237 NR_136236 NR_136235 NR_136234 NR_136233 NR_136232 NM_001322224 BC046183 |
|---|---|
| Distance: | 0 |
| Num_trans: | 23 |
| All_trans: | ENST00000649557.1:0 ENST00000423591.5:0 ENST00000476484.5:0 NR_136238:0 NR_136237:0 NR_136236:0 NR_136235:0 NR_136234:0 NR_136233:0 NR_136232:0 NM_001322224:0 BC046183:0 ENST00000650398.1:17 ENST00000479094.5:23 ENST00000523407.1:23 BC038803:23 ENST00000520403.1:35 BC037551:50 BC063650:50 BC080634:73 DQ580956:243 ENST00000483056.5:339 ENST00000428152.1:433 |
TATA-Box annotation
| Distance to TSS: | 25 |
|---|---|
| Nearest PromoterID: | NR_136237 |
| Entrez ID: | 158293 |
| Nearest Unigene: | Hs.350364 |
| Nearest Refseq: | NM_198841 |
| Nearest Ensembl: | ENSG00000188938 |
| Gene Name: | family with sequence similarity 120A opposite strand |
| Gene Alias: | C9orf10OS |
| Gene Description: | family with sequence similarity 120A opposite strand |
| Gene Type: | protein-coding |
| CpG%: | 0.175 |
| GC%: | 0.830846 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
