Difference between revisions of "TSS:Hg 101566.1"
From referenceTSS
| Line 6: | Line 6: | ||
|PTCH= | |PTCH= | ||
|PTCH11= | |PTCH11= | ||
| − | |all_trans=ENST00000429896.6:-8 | + | |all_trans=ENST00000429896.6:-8 U43148:-8 NM_001083606:-18 ENST00000551845.5:132 ENST00000418258.5:199 ENST00000553011.5:199 NM_001083607:199 AB189440:199 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
|distance=-8 | |distance=-8 | ||
| − | |distance_to_tss= | + | |distance_to_tss=24 |
|end=95507409 | |end=95507409 | ||
|end_of_center_position=95507404 | |end_of_center_position=95507404 | ||
|entrez_id=5727 | |entrez_id=5727 | ||
|gc_percent=0.661692 | |gc_percent=0.661692 | ||
| − | |gene_alias=BCNS | + | |gene_alias=BCNS{{!}}NBCCS{{!}}PTC{{!}}PTC1{{!}}PTCH |
|gene_description=patched 1 | |gene_description=patched 1 | ||
|gene_id=5727 | |gene_id=5727 | ||
| Line 28: | Line 28: | ||
|nearest_refseq=NM_000264 | |nearest_refseq=NM_000264 | ||
|nearest_unigene=Hs.494538 | |nearest_unigene=Hs.494538 | ||
| − | |num_trans= | + | |num_trans=8 |
|species=human | |species=human | ||
|start=95507397 | |start=95507397 | ||
|start_of_center_position=95507403 | |start_of_center_position=95507403 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000429896.6 | + | |transcript_name=ENST00000429896.6 U43148 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_101566.1 | |tss_id=hg_101566.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=Q13635 | + | |uniprot_id=Q13635 |
}} | }} | ||
Revision as of 16:43, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 95507403 |
|---|---|
| End of the center position in the TSS region: | 95507404 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000429896.6 U43148 |
|---|---|
| Distance: | -8 |
| Num_trans: | 8 |
| All_trans: | ENST00000429896.6:-8 U43148:-8 NM_001083606:-18 ENST00000551845.5:132 ENST00000418258.5:199 ENST00000553011.5:199 NM_001083607:199 AB189440:199 |
TATA-Box annotation
| Distance to TSS: | 24 |
|---|---|
| Nearest PromoterID: | NM_001083606 |
| Entrez ID: | 5727 |
| Nearest Unigene: | Hs.494538 |
| Nearest Refseq: | NM_000264 |
| Nearest Ensembl: | ENSG00000185920 |
| Gene Name: | patched 1 |
| Gene Alias: | BCNS|NBCCS|PTC|PTC1|PTCH |
| Gene Description: | patched 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.661692 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
