Difference between revisions of "TSS:Hg 101673.1"
From referenceTSS
| Line 2: | Line 2: | ||
|IR10= | |IR10= | ||
|WDR2= | |WDR2= | ||
| − | |all_trans=ENST00000343933.9 | + | |all_trans=ENST00000343933.9:-116 NM_003389:-124 U57057:-124 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0 | |cpg_percent=0 | ||
| Line 11: | Line 11: | ||
|entrez_id=7464 | |entrez_id=7464 | ||
|gc_percent=0.537313 | |gc_percent=0.537313 | ||
| − | |gene_alias=CLIPINB | + | |gene_alias=CLIPINB{{!}}IR10{{!}}WDR2 |
|gene_description=coronin 2A | |gene_description=coronin 2A | ||
|gene_id=7464 | |gene_id=7464 | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NM_003389 | |nearest_refseq=NM_003389 | ||
|nearest_unigene=Hs.113094 | |nearest_unigene=Hs.113094 | ||
| − | |num_trans= | + | |num_trans=3 |
|species=human | |species=human | ||
|start=98172761 | |start=98172761 | ||
|start_of_center_position=98172764 | |start_of_center_position=98172764 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-90(CCTCATAAACCC,+,0.00) |
| − | |transcript_name=ENST00000343933.9 | + | |transcript_name=ENST00000343933.9 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_101673.1 | |tss_id=hg_101673.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=A0A024R150 | + | |uniprot_id=A0A024R150 |
}} | }} | ||
Revision as of 16:45, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 98172764 |
|---|---|
| End of the center position in the TSS region: | 98172765 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000343933.9 |
|---|---|
| Distance: | -116 |
| Num_trans: | 3 |
| All_trans: | ENST00000343933.9:-116 NM_003389:-124 U57057:-124 |
TATA-Box annotation
| Distance to TSS: | 127 |
|---|---|
| Nearest PromoterID: | NM_003389 |
| Entrez ID: | 7464 |
| Nearest Unigene: | Hs.113094 |
| Nearest Refseq: | NM_003389 |
| Nearest Ensembl: | ENSG00000106789 |
| Gene Name: | coronin 2A |
| Gene Alias: | CLIPINB|IR10|WDR2 |
| Gene Description: | coronin 2A |
| Gene Type: | protein-coding |
| CpG%: | 0 |
| GC%: | 0.537313 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -90(CCTCATAAACCC,+,0.00) |
