Difference between revisions of "TSS:Hg 101681.1"
From referenceTSS
| Line 2: | Line 2: | ||
|PARIS1= | |PARIS1= | ||
|TBC1D2A= | |TBC1D2A= | ||
| − | |all_trans=ENST00000342112.9 | + | |all_trans=ENST00000342112.9:0 AK131290:0 ENST00000375064.5:10 AF318370:10 BC071978:-15 ENST00000375066.6:-18 AY026527:-18 ENST00000465784.7:-34 NR_051978:-34 NM_001267571:-34 NM_018421:-34 AB449882:49 AB209721:69 AK298575:198 CU687204:305 AK026105:379 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=47 |
|end=98255615 | |end=98255615 | ||
|end_of_center_position=98255603 | |end_of_center_position=98255603 | ||
|entrez_id=55357 | |entrez_id=55357 | ||
|gc_percent=0.726368 | |gc_percent=0.726368 | ||
| − | |gene_alias=PARIS-1 | + | |gene_alias=PARIS-1{{!}}PARIS1{{!}}TBC1D2A |
|gene_description=TBC1 domain family member 2 | |gene_description=TBC1 domain family member 2 | ||
|gene_id=55357 | |gene_id=55357 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:18026 | |hgnc_mgi_id=HGNC:18026 | ||
|nearest_ensembl=ENSG00000095383 | |nearest_ensembl=ENSG00000095383 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_051978 |
|nearest_refseq=NM_018421 | |nearest_refseq=NM_018421 | ||
|nearest_unigene=Hs.371016 | |nearest_unigene=Hs.371016 | ||
| − | |num_trans= | + | |num_trans=16 |
|species=human | |species=human | ||
|start=98255589 | |start=98255589 | ||
|start_of_center_position=98255602 | |start_of_center_position=98255602 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000342112.9 | + | |transcript_name=ENST00000342112.9 AK131290 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_101681.1 | |tss_id=hg_101681.1 | ||
Revision as of 16:46, 15 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 98255602 |
|---|---|
| End of the center position in the TSS region: | 98255603 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000342112.9 AK131290 |
|---|---|
| Distance: | 0 |
| Num_trans: | 16 |
| All_trans: | ENST00000342112.9:0 AK131290:0 ENST00000375064.5:10 AF318370:10 BC071978:-15 ENST00000375066.6:-18 AY026527:-18 ENST00000465784.7:-34 NR_051978:-34 NM_001267571:-34 NM_018421:-34 AB449882:49 AB209721:69 AK298575:198 CU687204:305 AK026105:379 |
TATA-Box annotation
| Distance to TSS: | 47 |
|---|---|
| Nearest PromoterID: | NR_051978 |
| Entrez ID: | 55357 |
| Nearest Unigene: | Hs.371016 |
| Nearest Refseq: | NM_018421 |
| Nearest Ensembl: | ENSG00000095383 |
| Gene Name: | TBC1 domain family member 2 |
| Gene Alias: | PARIS-1|PARIS1|TBC1D2A |
| Gene Description: | TBC1 domain family member 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.726368 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
