Difference between revisions of "TSS:Hg 101830.1"
From referenceTSS
| Line 5: | Line 5: | ||
|MDDGB4= | |MDDGB4= | ||
|MDDGC4= | |MDDGC4= | ||
| − | |all_trans=ENST00000421614. | + | |all_trans=ENST00000421614.2:0 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.07 | |cpg_percent=0.07 | ||
| − | |distance= | + | |distance=0 |
| − | |distance_to_tss= | + | |distance_to_tss=175 |
|end=105558311 | |end=105558311 | ||
|end_of_center_position=105558306 | |end_of_center_position=105558306 | ||
|entrez_id=2218 | |entrez_id=2218 | ||
|gc_percent=0.661692 | |gc_percent=0.661692 | ||
| − | |gene_alias=CMD1X | + | |gene_alias=CMD1X{{!}}FCMD{{!}}LGMD2M{{!}}LGMDR13{{!}}MDDGA4{{!}}MDDGB4{{!}}MDDGC4 |
|gene_description=fukutin | |gene_description=fukutin | ||
| − | |gene_name= | + | |gene_id=105376199 |
| + | |gene_name=uncharacterized LOC105376199 | ||
| + | |gene_source=EntrezGene:105376199 | ||
| + | |gene_symbol=LOC105376199 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id= | ||
|nearest_ensembl=ENSG00000106692 | |nearest_ensembl=ENSG00000106692 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001351502 |
|nearest_refseq=NM_006731 | |nearest_refseq=NM_006731 | ||
|nearest_unigene=Hs.55777 | |nearest_unigene=Hs.55777 | ||
| − | |num_trans= | + | |num_trans=1 |
|species=human | |species=human | ||
|start=105558300 | |start=105558300 | ||
|start_of_center_position=105558305 | |start_of_center_position=105558305 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000421614. | + | |transcript_name=ENST00000421614.2 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_101830.1 | |tss_id=hg_101830.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 16:49, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 105558305 |
|---|---|
| End of the center position in the TSS region: | 105558306 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000421614.2 |
|---|---|
| Distance: | 0 |
| Num_trans: | 1 |
| All_trans: | ENST00000421614.2:0 |
TATA-Box annotation
| Distance to TSS: | 175 |
|---|---|
| Nearest PromoterID: | NM_001351502 |
| Entrez ID: | 2218 |
| Nearest Unigene: | Hs.55777 |
| Nearest Refseq: | NM_006731 |
| Nearest Ensembl: | ENSG00000106692 |
| Gene Name: | uncharacterized LOC105376199 |
| Gene Alias: | CMD1X|FCMD|LGMD2M|LGMDR13|MDDGA4|MDDGB4|MDDGC4 |
| Gene Description: | fukutin |
| Gene Type: | protein-coding |
| CpG%: | 0.07 |
| GC%: | 0.661692 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
