Difference between revisions of "TSS:Hg 10191.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|GLUT5= | |GLUT5= | ||
| − | |all_trans=ENST00000377414.7 | + | |all_trans=ENST00000377414.7:0 BC001692:0 BC001820:0 BC035878:0 AK289849:0 AK295785:0 M55531:-6 AK290398:-13 AK300091:28 ENST00000377424.9:-30 NM_003039:-30 NM_001328621:-30 NM_001328620:-30 NM_001135585:-30 KJ892149:35 KJ892150:35 CU674838:35 DQ892291:36 DQ895491:36 AK294368:-47 HM005394:-223 ENST00000473209.1:-246 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=46 |
|end=9069605 | |end=9069605 | ||
|end_of_center_position=9069589 | |end_of_center_position=9069589 | ||
|entrez_id=6518 | |entrez_id=6518 | ||
|gc_percent=0.482587 | |gc_percent=0.482587 | ||
| − | |gene_alias=GLUT-5 | + | |gene_alias=GLUT-5{{!}}GLUT5 |
|gene_description=solute carrier family 2 member 5 | |gene_description=solute carrier family 2 member 5 | ||
|gene_id=6518 | |gene_id=6518 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=HGNC:11010 | |hgnc_mgi_id=HGNC:11010 | ||
|nearest_ensembl=ENSG00000142583 | |nearest_ensembl=ENSG00000142583 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001328621 |
|nearest_refseq=NM_003039 | |nearest_refseq=NM_003039 | ||
|nearest_unigene=Hs.530003 | |nearest_unigene=Hs.530003 | ||
| Line 28: | Line 28: | ||
|start_of_center_position=9069588 | |start_of_center_position=9069588 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-78(GGCTATAAAAAT,-,0.00) |
| − | |transcript_name=ENST00000377414.7 | + | |transcript_name=ENST00000377414.7 BC001692 BC001820 BC035878 AK289849 AK295785 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_10191.1 | |tss_id=hg_10191.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=B4DIU4 | + | |uniprot_id=A0A140VJK5 B4DIU4 |
}} | }} | ||
Revision as of 16:51, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 9069588 |
|---|---|
| End of the center position in the TSS region: | 9069589 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000377414.7 BC001692 BC001820 BC035878 AK289849 AK295785 |
|---|---|
| Distance: | 0 |
| Num_trans: | 22 |
| All_trans: | ENST00000377414.7:0 BC001692:0 BC001820:0 BC035878:0 AK289849:0 AK295785:0 M55531:-6 AK290398:-13 AK300091:28 ENST00000377424.9:-30 NM_003039:-30 NM_001328621:-30 NM_001328620:-30 NM_001135585:-30 KJ892149:35 KJ892150:35 CU674838:35 DQ892291:36 DQ895491:36 AK294368:-47 HM005394:-223 ENST00000473209.1:-246 |
TATA-Box annotation
| Distance to TSS: | 46 |
|---|---|
| Nearest PromoterID: | NM_001328621 |
| Entrez ID: | 6518 |
| Nearest Unigene: | Hs.530003 |
| Nearest Refseq: | NM_003039 |
| Nearest Ensembl: | ENSG00000142583 |
| Gene Name: | solute carrier family 2 member 5 |
| Gene Alias: | GLUT-5|GLUT5 |
| Gene Description: | solute carrier family 2 member 5 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.482587 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -78(GGCTATAAAAAT,-,0.00) |
