Difference between revisions of "TSS:Hg 101925.1"
From referenceTSS
| Line 2: | Line 2: | ||
|TRX= | |TRX= | ||
|TRX1= | |TRX1= | ||
| − | |all_trans=AK289508:0 D28376:3 BX647247:15 X77584:41 BC054866:49 BC003377:64 J04026:64 | + | |all_trans=AK289508:0 D28376:3 BX647247:15 X77584:41 ENST00000374517.6:49 NM_001244938:49 NM_003329:49 BC054866:49 HM005512:58 BC003377:64 J04026:64 LP747439:-74 MB486579:-74 ENST00000374515.9:90 AF085844:109 AY004872:111 AF313911:111 AF276919:121 JQ313905:121 KJ897717:121 CR407665:121 AF065241:124 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.125 | |cpg_percent=0.125 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-54 |
|end=110256566 | |end=110256566 | ||
|end_of_center_position=110256561 | |end_of_center_position=110256561 | ||
|entrez_id=7295 | |entrez_id=7295 | ||
|gc_percent=0.706468 | |gc_percent=0.706468 | ||
| − | |gene_alias=TRDX | + | |gene_alias=TRDX{{!}}TRX{{!}}TRX1 |
|gene_description=thioredoxin | |gene_description=thioredoxin | ||
|gene_id=7295 | |gene_id=7295 | ||
| Line 17: | Line 17: | ||
|gene_source=HGNC:12435 | |gene_source=HGNC:12435 | ||
|gene_symbol=TXN | |gene_symbol=TXN | ||
| − | |gene_synonyms=TRX | + | |gene_synonyms=TRX Trx80 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:12435 | |hgnc_mgi_id=HGNC:12435 | ||
|nearest_ensembl=ENSG00000136810 | |nearest_ensembl=ENSG00000136810 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001244938 |
|nearest_refseq=NM_003329 | |nearest_refseq=NM_003329 | ||
|nearest_unigene=Hs.435136 | |nearest_unigene=Hs.435136 | ||
| − | |num_trans= | + | |num_trans=22 |
|species=human | |species=human | ||
|start=110256555 | |start=110256555 | ||
|start_of_center_position=110256560 | |start_of_center_position=110256560 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=19(CAGTTTATAAAG,-,0.00),21(GTTTATAAAGGG,+,0.00),21(GTTTATAAAGGG,-,0.00) |
|transcript_name=AK289508 | |transcript_name=AK289508 | ||
|tss_classification=yes | |tss_classification=yes | ||
Revision as of 16:51, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 110256560 |
|---|---|
| End of the center position in the TSS region: | 110256561 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AK289508 |
|---|---|
| Distance: | 0 |
| Num_trans: | 22 |
| All_trans: | AK289508:0 D28376:3 BX647247:15 X77584:41 ENST00000374517.6:49 NM_001244938:49 NM_003329:49 BC054866:49 HM005512:58 BC003377:64 J04026:64 LP747439:-74 MB486579:-74 ENST00000374515.9:90 AF085844:109 AY004872:111 AF313911:111 AF276919:121 JQ313905:121 KJ897717:121 CR407665:121 AF065241:124 |
TATA-Box annotation
| Distance to TSS: | -54 |
|---|---|
| Nearest PromoterID: | NM_001244938 |
| Entrez ID: | 7295 |
| Nearest Unigene: | Hs.435136 |
| Nearest Refseq: | NM_003329 |
| Nearest Ensembl: | ENSG00000136810 |
| Gene Name: | thioredoxin |
| Gene Alias: | TRDX|TRX|TRX1 |
| Gene Description: | thioredoxin |
| Gene Type: | protein-coding |
| CpG%: | 0.125 |
| GC%: | 0.706468 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 19(CAGTTTATAAAG,-,0.00),21(GTTTATAAAGGG,+,0.00),21(GTTTATAAAGGG,-,0.00) |
