Difference between revisions of "TSS:Hg 101965.1"
From referenceTSS
| Line 5: | Line 5: | ||
|Mrec1.3= | |Mrec1.3= | ||
|VZG1= | |VZG1= | ||
| − | |all_trans=ENST00000374431.7 | + | |all_trans=ENST00000374431.7:-22 BC036034:-22 AK299279:45 ENST00000358883.8:-64 AK022808:-64 NM_001401:-66 NM_057159:-66 NM_001351418:-66 NM_001351417:-66 NM_001351416:-66 NM_001351415:-66 NM_001351419:380 ENST00000441240.1:-437 NM_001351414:-449 NM_001351413:-449 NM_001351412:-449 NM_001351411:-449 NM_001351410:-449 NM_001351409:-449 NM_001351408:-449 NM_001351407:-449 NM_001351406:-449 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.14 | |cpg_percent=0.14 | ||
|distance=-22 | |distance=-22 | ||
| − | |distance_to_tss= | + | |distance_to_tss=72 |
|edg-2= | |edg-2= | ||
|end=111038021 | |end=111038021 | ||
| Line 15: | Line 15: | ||
|entrez_id=1902 | |entrez_id=1902 | ||
|gc_percent=0.761194 | |gc_percent=0.761194 | ||
| − | |gene_alias=EDG2 | + | |gene_alias=EDG2{{!}}GPR26{{!}}Gpcr26{{!}}LPA1{{!}}Mrec1.3{{!}}VZG1{{!}}edg-2{{!}}rec.1.3{{!}}vzg-1 |
|gene_description=lysophosphatidic acid receptor 1 | |gene_description=lysophosphatidic acid receptor 1 | ||
|gene_id=1902 | |gene_id=1902 | ||
| Line 21: | Line 21: | ||
|gene_source=HGNC:3166 | |gene_source=HGNC:3166 | ||
|gene_symbol=LPAR1 | |gene_symbol=LPAR1 | ||
| − | |gene_synonyms= | + | |gene_synonyms=Gpcr26 LPA1 Mrec1.3 edg-2 rec.1.3 vzg-1 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:3166 | |hgnc_mgi_id=HGNC:3166 | ||
|nearest_ensembl=ENSG00000198121 | |nearest_ensembl=ENSG00000198121 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_057159 |
|nearest_refseq=NM_001401 | |nearest_refseq=NM_001401 | ||
|nearest_unigene=Hs.126667 | |nearest_unigene=Hs.126667 | ||
| − | |num_trans= | + | |num_trans=22 |
|rec.1.3= | |rec.1.3= | ||
|species=human | |species=human | ||
| Line 34: | Line 34: | ||
|start_of_center_position=111038014 | |start_of_center_position=111038014 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000374431.7 | + | |transcript_name=ENST00000374431.7 BC036034 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_101965.1 | |tss_id=hg_101965.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=Q5VZX0 | + | |uniprot_id=Q5VZX0 |
|vzg-1= | |vzg-1= | ||
}} | }} | ||
Revision as of 16:52, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 111038014 |
|---|---|
| End of the center position in the TSS region: | 111038015 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000374431.7 BC036034 |
|---|---|
| Distance: | -22 |
| Num_trans: | 22 |
| All_trans: | ENST00000374431.7:-22 BC036034:-22 AK299279:45 ENST00000358883.8:-64 AK022808:-64 NM_001401:-66 NM_057159:-66 NM_001351418:-66 NM_001351417:-66 NM_001351416:-66 NM_001351415:-66 NM_001351419:380 ENST00000441240.1:-437 NM_001351414:-449 NM_001351413:-449 NM_001351412:-449 NM_001351411:-449 NM_001351410:-449 NM_001351409:-449 NM_001351408:-449 NM_001351407:-449 NM_001351406:-449 |
TATA-Box annotation
| Distance to TSS: | 72 |
|---|---|
| Nearest PromoterID: | NM_057159 |
| Entrez ID: | 1902 |
| Nearest Unigene: | Hs.126667 |
| Nearest Refseq: | NM_001401 |
| Nearest Ensembl: | ENSG00000198121 |
| Gene Name: | lysophosphatidic acid receptor 1 |
| Gene Alias: | EDG2|GPR26|Gpcr26|LPA1|Mrec1.3|VZG1|edg-2|rec.1.3|vzg-1 |
| Gene Description: | lysophosphatidic acid receptor 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.14 |
| GC%: | 0.761194 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
