Difference between revisions of "TSS:Hg 101968.1"
From referenceTSS
| Line 5: | Line 5: | ||
|Mrec1.3= | |Mrec1.3= | ||
|VZG1= | |VZG1= | ||
| − | |all_trans= | + | |all_trans=NM_001401:11 NM_057159:11 NM_001351418:11 NM_001351417:11 NM_001351416:11 NM_001351415:11 ENST00000358883.8:13 AK022808:13 ENST00000374431.7:55 BC036034:55 AK299279:134 ENST00000441240.1:-338 NM_001351414:-350 NM_001351413:-350 NM_001351412:-350 NM_001351411:-350 NM_001351410:-350 NM_001351409:-350 NM_001351408:-350 NM_001351407:-350 NM_001351406:-350 NM_001351419:469 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.16 | |cpg_percent=0.16 | ||
| − | |distance= | + | |distance=11 |
| − | |distance_to_tss=- | + | |distance_to_tss=-22 |
|edg-2= | |edg-2= | ||
|end=111038120 | |end=111038120 | ||
| Line 15: | Line 15: | ||
|entrez_id=1902 | |entrez_id=1902 | ||
|gc_percent=0.78607 | |gc_percent=0.78607 | ||
| − | |gene_alias=EDG2 | + | |gene_alias=EDG2{{!}}GPR26{{!}}Gpcr26{{!}}LPA1{{!}}Mrec1.3{{!}}VZG1{{!}}edg-2{{!}}rec.1.3{{!}}vzg-1 |
|gene_description=lysophosphatidic acid receptor 1 | |gene_description=lysophosphatidic acid receptor 1 | ||
|gene_id=1902 | |gene_id=1902 | ||
| Line 21: | Line 21: | ||
|gene_source=HGNC:3166 | |gene_source=HGNC:3166 | ||
|gene_symbol=LPAR1 | |gene_symbol=LPAR1 | ||
| − | |gene_synonyms= | + | |gene_synonyms=Gpcr26 LPA1 Mrec1.3 edg-2 rec.1.3 vzg-1 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:3166 | |hgnc_mgi_id=HGNC:3166 | ||
|nearest_ensembl=ENSG00000198121 | |nearest_ensembl=ENSG00000198121 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001351416 |
|nearest_refseq=NM_001401 | |nearest_refseq=NM_001401 | ||
|nearest_unigene=Hs.126667 | |nearest_unigene=Hs.126667 | ||
| − | |num_trans= | + | |num_trans=22 |
|rec.1.3= | |rec.1.3= | ||
|species=human | |species=human | ||
| Line 34: | Line 34: | ||
|start_of_center_position=111038108 | |start_of_center_position=111038108 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=NM_001401 NM_057159 NM_001351418 NM_001351417 NM_001351416 NM_001351415 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_101968.1 | |tss_id=hg_101968.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q92633 |
|vzg-1= | |vzg-1= | ||
}} | }} | ||
Revision as of 16:52, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 111038108 |
|---|---|
| End of the center position in the TSS region: | 111038109 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_001401 NM_057159 NM_001351418 NM_001351417 NM_001351416 NM_001351415 |
|---|---|
| Distance: | 11 |
| Num_trans: | 22 |
| All_trans: | NM_001401:11 NM_057159:11 NM_001351418:11 NM_001351417:11 NM_001351416:11 NM_001351415:11 ENST00000358883.8:13 AK022808:13 ENST00000374431.7:55 BC036034:55 AK299279:134 ENST00000441240.1:-338 NM_001351414:-350 NM_001351413:-350 NM_001351412:-350 NM_001351411:-350 NM_001351410:-350 NM_001351409:-350 NM_001351408:-350 NM_001351407:-350 NM_001351406:-350 NM_001351419:469 |
TATA-Box annotation
| Distance to TSS: | -22 |
|---|---|
| Nearest PromoterID: | NM_001351416 |
| Entrez ID: | 1902 |
| Nearest Unigene: | Hs.126667 |
| Nearest Refseq: | NM_001401 |
| Nearest Ensembl: | ENSG00000198121 |
| Gene Name: | lysophosphatidic acid receptor 1 |
| Gene Alias: | EDG2|GPR26|Gpcr26|LPA1|Mrec1.3|VZG1|edg-2|rec.1.3|vzg-1 |
| Gene Description: | lysophosphatidic acid receptor 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.16 |
| GC%: | 0.78607 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
