Difference between revisions of "TSS:Hg 101993.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=ENST00000411306.1:349 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
|distance=349 | |distance=349 | ||
| − | |distance_to_tss= | + | |distance_to_tss=71466 |
|end=111412101 | |end=111412101 | ||
|end_of_center_position=111412096 | |end_of_center_position=111412096 | ||
|entrez_id=23392 | |entrez_id=23392 | ||
|gc_percent=0.348259 | |gc_percent=0.348259 | ||
| − | |gene_alias=ECM29 | + | |gene_alias=ECM29{{!}}KIAA0368 |
| − | |gene_description= | + | |gene_description=Ecm29 proteasome adaptor and scaffold |
| − | |gene_name= | + | |gene_id= |
| + | |gene_name=RNA, 5S ribosomal pseudogene 294 | ||
| + | |gene_source=HGNC:43194 | ||
| + | |gene_symbol=RNA5SP294 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:43194 | ||
|nearest_ensembl=ENSG00000136813 | |nearest_ensembl=ENSG00000136813 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001364930 |
|nearest_refseq=NM_001080398 | |nearest_refseq=NM_001080398 | ||
|nearest_unigene=Hs.368255 | |nearest_unigene=Hs.368255 | ||
| Line 22: | Line 27: | ||
|start_of_center_position=111412095 | |start_of_center_position=111412095 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=55(GCTTATAAAGAC,+,0.00) |
| − | |transcript_name= | + | |transcript_name=ENST00000411306.1 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_101993.1 | |tss_id=hg_101993.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 16:53, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 111412095 |
|---|---|
| End of the center position in the TSS region: | 111412096 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000411306.1 |
|---|---|
| Distance: | 349 |
| Num_trans: | 1 |
| All_trans: | ENST00000411306.1:349 |
TATA-Box annotation
| Distance to TSS: | 71466 |
|---|---|
| Nearest PromoterID: | NM_001364930 |
| Entrez ID: | 23392 |
| Nearest Unigene: | Hs.368255 |
| Nearest Refseq: | NM_001080398 |
| Nearest Ensembl: | ENSG00000136813 |
| Gene Name: | RNA, 5S ribosomal pseudogene 294 |
| Gene Alias: | ECM29|KIAA0368 |
| Gene Description: | Ecm29 proteasome adaptor and scaffold |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.348259 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 55(GCTTATAAAGAC,+,0.00) |
