Difference between revisions of "TSS:Hg 102220.1"
From referenceTSS
| Line 7: | Line 7: | ||
|TN= | |TN= | ||
|TN-C= | |TN-C= | ||
| − | |all_trans=ENST00000537320.5 | + | |all_trans=ENST00000537320.5:-8 M55618:-12 ENST00000341037.8:-14 LF355115:18 MA590692:18 LF213716:-22 MA449293:-22 X56160:56 KJ904485:99 AB384681:101 ENST00000542877.5:103 GU473235:103 LF355114:157 MA590691:157 X80280:238 LF355113:341 MA590690:341 LF355112:469 MA590689:469 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0 | |cpg_percent=0 | ||
|distance=-8 | |distance=-8 | ||
| − | |distance_to_tss= | + | |distance_to_tss=27030 |
|end=115091133 | |end=115091133 | ||
|end_of_center_position=115091127 | |end_of_center_position=115091127 | ||
|entrez_id=3371 | |entrez_id=3371 | ||
|gc_percent=0.383085 | |gc_percent=0.383085 | ||
| − | |gene_alias=150-225 | + | |gene_alias=150-225{{!}}DFNA56{{!}}GMEM{{!}}GP{{!}}HXB{{!}}JI{{!}}TN{{!}}TN-C |
|gene_description=tenascin C | |gene_description=tenascin C | ||
|gene_id=3371 | |gene_id=3371 | ||
| Line 29: | Line 29: | ||
|nearest_refseq=NM_002160 | |nearest_refseq=NM_002160 | ||
|nearest_unigene=Hs.143250 | |nearest_unigene=Hs.143250 | ||
| − | |num_trans= | + | |num_trans=19 |
|species=human | |species=human | ||
|start=115091120 | |start=115091120 | ||
|start_of_center_position=115091126 | |start_of_center_position=115091126 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000537320.5 | + | |transcript_name=ENST00000537320.5 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_102220.1 | |tss_id=hg_102220.1 | ||
Revision as of 16:58, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 115091126 |
|---|---|
| End of the center position in the TSS region: | 115091127 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000537320.5 |
|---|---|
| Distance: | -8 |
| Num_trans: | 19 |
| All_trans: | ENST00000537320.5:-8 M55618:-12 ENST00000341037.8:-14 LF355115:18 MA590692:18 LF213716:-22 MA449293:-22 X56160:56 KJ904485:99 AB384681:101 ENST00000542877.5:103 GU473235:103 LF355114:157 MA590691:157 X80280:238 LF355113:341 MA590690:341 LF355112:469 MA590689:469 |
TATA-Box annotation
| Distance to TSS: | 27030 |
|---|---|
| Nearest PromoterID: | NM_002160 |
| Entrez ID: | 3371 |
| Nearest Unigene: | Hs.143250 |
| Nearest Refseq: | NM_002160 |
| Nearest Ensembl: | ENSG00000041982 |
| Gene Name: | tenascin C |
| Gene Alias: | 150-225|DFNA56|GMEM|GP|HXB|JI|TN|TN-C |
| Gene Description: | tenascin C |
| Gene Type: | protein-coding |
| CpG%: | 0 |
| GC%: | 0.383085 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
