Difference between revisions of "TSS:Hg 102222.1"
From referenceTSS
| Line 7: | Line 7: | ||
|TN= | |TN= | ||
|TN-C= | |TN-C= | ||
| − | |all_trans=AK304015:0 X78565:0 AB210038:13 ENST00000534839.1:-35 | + | |all_trans=ENST00000350763.9:0 NM_002160:0 AK304015:0 X78565:0 AB210038:13 ENST00000534839.1:-35 LF206489:-67 MA442066:-67 ENST00000535648.5:-93 LF355123:109 MA590700:109 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.08 | |cpg_percent=0.08 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=2 |
|end=115118164 | |end=115118164 | ||
|end_of_center_position=115118155 | |end_of_center_position=115118155 | ||
|entrez_id=3371 | |entrez_id=3371 | ||
|gc_percent=0.626866 | |gc_percent=0.626866 | ||
| − | |gene_alias=150-225 | + | |gene_alias=150-225{{!}}DFNA56{{!}}GMEM{{!}}GP{{!}}HXB{{!}}JI{{!}}TN{{!}}TN-C |
|gene_description=tenascin C | |gene_description=tenascin C | ||
|gene_id=3371 | |gene_id=3371 | ||
| Line 29: | Line 29: | ||
|nearest_refseq=NM_002160 | |nearest_refseq=NM_002160 | ||
|nearest_unigene=Hs.143250 | |nearest_unigene=Hs.143250 | ||
| − | |num_trans= | + | |num_trans=11 |
|species=human | |species=human | ||
|start=115118145 | |start=115118145 | ||
|start_of_center_position=115118154 | |start_of_center_position=115118154 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-34(CGCTATATAAGC,-,0.00) |
| − | |transcript_name=AK304015 X78565 | + | |transcript_name=ENST00000350763.9 NM_002160 AK304015 X78565 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_102222.1 | |tss_id=hg_102222.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=B4E1W8 | + | |uniprot_id=B4E1W8 P24821 Q4LE33 |
}} | }} | ||
Revision as of 16:58, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 115118154 |
|---|---|
| End of the center position in the TSS region: | 115118155 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000350763.9 NM_002160 AK304015 X78565 |
|---|---|
| Distance: | 0 |
| Num_trans: | 11 |
| All_trans: | ENST00000350763.9:0 NM_002160:0 AK304015:0 X78565:0 AB210038:13 ENST00000534839.1:-35 LF206489:-67 MA442066:-67 ENST00000535648.5:-93 LF355123:109 MA590700:109 |
TATA-Box annotation
| Distance to TSS: | 2 |
|---|---|
| Nearest PromoterID: | NM_002160 |
| Entrez ID: | 3371 |
| Nearest Unigene: | Hs.143250 |
| Nearest Refseq: | NM_002160 |
| Nearest Ensembl: | ENSG00000041982 |
| Gene Name: | tenascin C |
| Gene Alias: | 150-225|DFNA56|GMEM|GP|HXB|JI|TN|TN-C |
| Gene Description: | tenascin C |
| Gene Type: | protein-coding |
| CpG%: | 0.08 |
| GC%: | 0.626866 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -34(CGCTATATAAGC,-,0.00) |
