Difference between revisions of "TSS:Hg 102239.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|EST-YD1= | |EST-YD1= | ||
| − | |all_trans=BC029369:0 | + | |all_trans=BC029369:0 BC104240:29 BC112996:29 BC112997:29 BC128039:29 BC104241:30 ENST00000374014.3:-77 NR_024032:-77 AB021923:-77 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=79 |
|end=115925130 | |end=115925130 | ||
|end_of_center_position=115925129 | |end_of_center_position=115925129 | ||
|entrez_id=58483 | |entrez_id=58483 | ||
|gc_percent=0.447761 | |gc_percent=0.447761 | ||
| − | |gene_alias=C9orf27 | + | |gene_alias=C9orf27{{!}}EST-YD1 |
|gene_description=long intergenic non-protein coding RNA 474 | |gene_description=long intergenic non-protein coding RNA 474 | ||
| − | |gene_name=LINC00474 | + | |gene_id=58483 |
| + | |gene_name=long intergenic non-protein coding RNA 474 | ||
| + | |gene_source=HGNC:23367 | ||
| + | |gene_symbol=LINC00474 | ||
| + | |gene_synonyms=EST-YD1 | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| − | |nearest_ensembl= | + | |hgnc_mgi_id=HGNC:23367 |
| + | |nearest_ensembl=ENSG00000204148 | ||
|nearest_promoter_id=NR_024032 | |nearest_promoter_id=NR_024032 | ||
| − | |nearest_refseq= | + | |nearest_refseq=NR_024032 |
|nearest_unigene=Hs.23367 | |nearest_unigene=Hs.23367 | ||
| − | |num_trans= | + | |num_trans=9 |
|species=human | |species=human | ||
|start=115925126 | |start=115925126 | ||
| Line 27: | Line 32: | ||
|tss_id=hg_102239.1 | |tss_id=hg_102239.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 16:59, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 115925128 |
|---|---|
| End of the center position in the TSS region: | 115925129 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC029369 |
|---|---|
| Distance: | 0 |
| Num_trans: | 9 |
| All_trans: | BC029369:0 BC104240:29 BC112996:29 BC112997:29 BC128039:29 BC104241:30 ENST00000374014.3:-77 NR_024032:-77 AB021923:-77 |
TATA-Box annotation
| Distance to TSS: | 79 |
|---|---|
| Nearest PromoterID: | NR_024032 |
| Entrez ID: | 58483 |
| Nearest Unigene: | Hs.23367 |
| Nearest Refseq: | NR_024032 |
| Nearest Ensembl: | ENSG00000204148 |
| Gene Name: | long intergenic non-protein coding RNA 474 |
| Gene Alias: | C9orf27|EST-YD1 |
| Gene Description: | long intergenic non-protein coding RNA 474 |
| Gene Type: | ncRNA |
| CpG%: | 0.005 |
| GC%: | 0.447761 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
