Difference between revisions of "TSS:Hg 102366.1"
From referenceTSS
| Line 3: | Line 3: | ||
|GLYT2= | |GLYT2= | ||
|a1/3GTP= | |a1/3GTP= | ||
| − | |all_trans=ENST00000481799. | + | |all_trans=BC045756:146 ENST00000481799.6:167 NR_168459:167 NR_168460:167 NR_168461:167 NM_001382584:167 NM_001382585:167 NM_001382586:167 ENST00000373793.3:195 ENST00000481534.5:254 ENST00000495328.5:254 AF378121:254 AF378123:254 AF378122:254 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.06 | |cpg_percent=0.06 | ||
| − | |distance= | + | |distance=146 |
|distance_to_tss=13 | |distance_to_tss=13 | ||
|end=121500017 | |end=121500017 | ||
| Line 12: | Line 12: | ||
|entrez_id=2681 | |entrez_id=2681 | ||
|gc_percent=0.651741 | |gc_percent=0.651741 | ||
| − | |gene_alias=GGTA | + | |gene_alias=GGTA{{!}}GGTA1{{!}}GLYT2{{!}}a1/3GTP |
| − | |gene_description= | + | |gene_description=glycoprotein alpha-galactosyltransferase 1, pseudogene |
|gene_id=2681 | |gene_id=2681 | ||
| − | |gene_name= | + | |gene_name=glycoprotein alpha-galactosyltransferase 1 (inactive) |
| − | |gene_source=HGNC:4253 | + | |gene_source=HGNC:4253 |
| − | |gene_symbol= | + | |gene_symbol=GGTA1 |
| − | |gene_synonyms= | + | |gene_synonyms= |
|gene_type=pseudo | |gene_type=pseudo | ||
| − | |hgnc_mgi_id=HGNC:4253 | + | |hgnc_mgi_id=HGNC:4253 |
|nearest_ensembl=ENSG00000204136 | |nearest_ensembl=ENSG00000204136 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_003191 |
|nearest_refseq=NR_003191 | |nearest_refseq=NR_003191 | ||
|nearest_unigene=Hs.97469 | |nearest_unigene=Hs.97469 | ||
| − | |num_trans= | + | |num_trans=14 |
|species=human | |species=human | ||
|start=121500010 | |start=121500010 | ||
|start_of_center_position=121500013 | |start_of_center_position=121500013 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=BC045756 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_102366.1 | |tss_id=hg_102366.1 | ||
Revision as of 17:01, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 121500013 |
|---|---|
| End of the center position in the TSS region: | 121500014 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC045756 |
|---|---|
| Distance: | 146 |
| Num_trans: | 14 |
| All_trans: | BC045756:146 ENST00000481799.6:167 NR_168459:167 NR_168460:167 NR_168461:167 NM_001382584:167 NM_001382585:167 NM_001382586:167 ENST00000373793.3:195 ENST00000481534.5:254 ENST00000495328.5:254 AF378121:254 AF378123:254 AF378122:254 |
TATA-Box annotation
| Distance to TSS: | 13 |
|---|---|
| Nearest PromoterID: | NR_003191 |
| Entrez ID: | 2681 |
| Nearest Unigene: | Hs.97469 |
| Nearest Refseq: | NR_003191 |
| Nearest Ensembl: | ENSG00000204136 |
| Gene Name: | glycoprotein alpha-galactosyltransferase 1 (inactive) |
| Gene Alias: | GGTA|GGTA1|GLYT2|a1/3GTP |
| Gene Description: | glycoprotein alpha-galactosyltransferase 1, pseudogene |
| Gene Type: | pseudo |
| CpG%: | 0.06 |
| GC%: | 0.651741 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
