Difference between revisions of "TSS:Hg 102388.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=AK313808:0 ENST00000373755.6:-41 ENST00000373754.6 | + | |all_trans=NM_001242334:0 NM_001348190:0 AK313808:0 ENST00000373755.6:-41 ENST00000373754.6:-41 AK289827:-41 AB031041:43 AB031042:43 EU446700:49 AM392697:49 AM393362:49 KJ902431:50 LF347013:-194 MA582590:-194 ENST00000560152.1:403 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.07 | |cpg_percent=0.07 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=6 |
|end=122227545 | |end=122227545 | ||
|end_of_center_position=122227536 | |end_of_center_position=122227536 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:21735 | |hgnc_mgi_id=HGNC:21735 | ||
|nearest_ensembl=ENSG00000106852 | |nearest_ensembl=ENSG00000106852 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001348190 |
|nearest_refseq=NM_014368 | |nearest_refseq=NM_014368 | ||
|nearest_unigene=Hs.103137 | |nearest_unigene=Hs.103137 | ||
| Line 27: | Line 27: | ||
|start_of_center_position=122227535 | |start_of_center_position=122227535 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-86(GGCTTTAAATGC,-,0.00),-84(CTTTAAATGCCC,+,0.00) |
| − | |transcript_name=AK313808 | + | |transcript_name=NM_001242334 NM_001348190 AK313808 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_102388.1 | |tss_id=hg_102388.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q9UPM6 |
}} | }} | ||
Revision as of 17:02, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 122227535 |
|---|---|
| End of the center position in the TSS region: | 122227536 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_001242334 NM_001348190 AK313808 |
|---|---|
| Distance: | 0 |
| Num_trans: | 15 |
| All_trans: | NM_001242334:0 NM_001348190:0 AK313808:0 ENST00000373755.6:-41 ENST00000373754.6:-41 AK289827:-41 AB031041:43 AB031042:43 EU446700:49 AM392697:49 AM393362:49 KJ902431:50 LF347013:-194 MA582590:-194 ENST00000560152.1:403 |
TATA-Box annotation
| Distance to TSS: | 6 |
|---|---|
| Nearest PromoterID: | NM_001348190 |
| Entrez ID: | 26468 |
| Nearest Unigene: | Hs.103137 |
| Nearest Refseq: | NM_014368 |
| Nearest Ensembl: | ENSG00000106852 |
| Gene Name: | LIM homeobox 6 |
| Gene Alias: | LHX6.1 |
| Gene Description: | LIM homeobox 6 |
| Gene Type: | protein-coding |
| CpG%: | 0.07 |
| GC%: | 0.641791 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -86(GGCTTTAAATGC,-,0.00),-84(CTTTAAATGCCC,+,0.00) |
