Difference between revisions of "TSS:Hg 102389.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000541397.2:0 ENST00000560485.1:0 NM_001242333 | + | |all_trans=ENST00000541397.2:0 ENST00000560485.1:0 NM_001242333:0 AK297175:0 BC103936:-231 BC103937:-231 BC103938:-231 AL136570:-265 LF211803:-325 MA447380:-325 ENST00000394319.8:-405 AK299709:-405 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=12 |
|end=122228440 | |end=122228440 | ||
|end_of_center_position=122228421 | |end_of_center_position=122228421 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_014368 | |nearest_refseq=NM_014368 | ||
|nearest_unigene=Hs.103137 | |nearest_unigene=Hs.103137 | ||
| − | |num_trans= | + | |num_trans=12 |
|species=human | |species=human | ||
|start=122228401 | |start=122228401 | ||
|start_of_center_position=122228420 | |start_of_center_position=122228420 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000541397.2 ENST00000560485.1 NM_001242333 | + | |transcript_name=ENST00000541397.2 ENST00000560485.1 NM_001242333 AK297175 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_102389.1 | |tss_id=hg_102389.1 | ||
Revision as of 17:02, 15 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 122228420 |
|---|---|
| End of the center position in the TSS region: | 122228421 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000541397.2 ENST00000560485.1 NM_001242333 AK297175 |
|---|---|
| Distance: | 0 |
| Num_trans: | 12 |
| All_trans: | ENST00000541397.2:0 ENST00000560485.1:0 NM_001242333:0 AK297175:0 BC103936:-231 BC103937:-231 BC103938:-231 AL136570:-265 LF211803:-325 MA447380:-325 ENST00000394319.8:-405 AK299709:-405 |
TATA-Box annotation
| Distance to TSS: | 12 |
|---|---|
| Nearest PromoterID: | NM_001242333 |
| Entrez ID: | 26468 |
| Nearest Unigene: | Hs.103137 |
| Nearest Refseq: | NM_014368 |
| Nearest Ensembl: | ENSG00000106852 |
| Gene Name: | LIM homeobox 6 |
| Gene Alias: | LHX6.1 |
| Gene Description: | LIM homeobox 6 |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.597015 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
