Difference between revisions of "TSS:Hg 102448.1"
From referenceTSS
| Line 4: | Line 4: | ||
|NR61= | |NR61= | ||
|RTR= | |RTR= | ||
| − | |all_trans=ENST00000416460.6:0 NM_033334:0 NM_001489:0 NM_001278546 | + | |all_trans=ENST00000487099.7:0 ENST00000416460.6:0 NM_033334:0 NM_001489:0 NM_001278546:0 BC030600:0 BC042395:0 BC042406:0 ENST00000373584.7:7 AF004291:7 S83309:7 ENST00000344523.8:17 X99975:27 U80802:28 U64876:110 HQ692858:185 HQ709185:185 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.15 | |cpg_percent=0.15 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-9 |
|end=124771336 | |end=124771336 | ||
|end_of_center_position=124771320 | |end_of_center_position=124771320 | ||
|entrez_id=2649 | |entrez_id=2649 | ||
|gc_percent=0.78607 | |gc_percent=0.78607 | ||
| − | |gene_alias=CT150 | + | |gene_alias=CT150{{!}}GCNF{{!}}GCNF1{{!}}NR61{{!}}RTR{{!}}hGCNF{{!}}hRTR |
|gene_description=nuclear receptor subfamily 6 group A member 1 | |gene_description=nuclear receptor subfamily 6 group A member 1 | ||
|gene_id=2649 | |gene_id=2649 | ||
| Line 28: | Line 28: | ||
|nearest_refseq=NM_001489 | |nearest_refseq=NM_001489 | ||
|nearest_unigene=Hs.20131 | |nearest_unigene=Hs.20131 | ||
| − | |num_trans= | + | |num_trans=17 |
|species=human | |species=human | ||
|start=124771303 | |start=124771303 | ||
|start_of_center_position=124771319 | |start_of_center_position=124771319 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000416460.6 NM_033334 NM_001489 NM_001278546 | + | |transcript_name=ENST00000487099.7 ENST00000416460.6 NM_033334 NM_001489 NM_001278546 BC030600 BC042395 BC042406 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_102448.1 | |tss_id=hg_102448.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=Q15406 | + | |uniprot_id=F1D8S0 Q15406 |
}} | }} | ||
Revision as of 17:04, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 124771319 |
|---|---|
| End of the center position in the TSS region: | 124771320 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000487099.7 ENST00000416460.6 NM_033334 NM_001489 NM_001278546 BC030600 BC042395 BC042406 |
|---|---|
| Distance: | 0 |
| Num_trans: | 17 |
| All_trans: | ENST00000487099.7:0 ENST00000416460.6:0 NM_033334:0 NM_001489:0 NM_001278546:0 BC030600:0 BC042395:0 BC042406:0 ENST00000373584.7:7 AF004291:7 S83309:7 ENST00000344523.8:17 X99975:27 U80802:28 U64876:110 HQ692858:185 HQ709185:185 |
TATA-Box annotation
| Distance to TSS: | -9 |
|---|---|
| Nearest PromoterID: | NM_033334 |
| Entrez ID: | 2649 |
| Nearest Unigene: | Hs.20131 |
| Nearest Refseq: | NM_001489 |
| Nearest Ensembl: | ENSG00000148200 |
| Gene Name: | nuclear receptor subfamily 6 group A member 1 |
| Gene Alias: | CT150|GCNF|GCNF1|NR61|RTR|hGCNF|hRTR |
| Gene Description: | nuclear receptor subfamily 6 group A member 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.15 |
| GC%: | 0.78607 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
