Difference between revisions of "TSS:Hg 10268.1"
From referenceTSS
| Line 3: | Line 3: | ||
|SRG= | |SRG= | ||
|ZNF693= | |ZNF693= | ||
| − | |all_trans=AK293839:0 AK311700:0 ENST00000496432.6 | + | |all_trans=AK293839:0 AK311700:0 ENST00000496432.6:-19 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.09 | |cpg_percent=0.09 | ||
|dJ734G22.1= | |dJ734G22.1= | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=102206 |
|end=10694460 | |end=10694460 | ||
|end_of_center_position=10694441 | |end_of_center_position=10694441 | ||
|entrez_id=54897 | |entrez_id=54897 | ||
|gc_percent=0.597015 | |gc_percent=0.597015 | ||
| − | |gene_alias=CAS11 | + | |gene_alias=CAS11{{!}}CST{{!}}SRG{{!}}ZNF693{{!}}dJ734G22.1 |
|gene_description=castor zinc finger 1 | |gene_description=castor zinc finger 1 | ||
|gene_id=54897 | |gene_id=54897 | ||
| Line 26: | Line 26: | ||
|nearest_refseq=NM_017766 | |nearest_refseq=NM_017766 | ||
|nearest_unigene=Hs.439894 | |nearest_unigene=Hs.439894 | ||
| − | |num_trans= | + | |num_trans=3 |
|species=human | |species=human | ||
|start=10694420 | |start=10694420 | ||
|start_of_center_position=10694440 | |start_of_center_position=10694440 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=34(GCTTTAAAACAA,+,0.00) |
|transcript_name=AK293839 AK311700 | |transcript_name=AK293839 AK311700 | ||
|tss_classification=yes | |tss_classification=yes | ||
Revision as of 17:09, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 10694440 |
|---|---|
| End of the center position in the TSS region: | 10694441 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AK293839 AK311700 |
|---|---|
| Distance: | 0 |
| Num_trans: | 3 |
| All_trans: | AK293839:0 AK311700:0 ENST00000496432.6:-19 |
TATA-Box annotation
| Distance to TSS: | 102206 |
|---|---|
| Nearest PromoterID: | NM_001079843 |
| Entrez ID: | 54897 |
| Nearest Unigene: | Hs.439894 |
| Nearest Refseq: | NM_017766 |
| Nearest Ensembl: | ENSG00000130940 |
| Gene Name: | castor zinc finger 1 |
| Gene Alias: | CAS11|CST|SRG|ZNF693|dJ734G22.1 |
| Gene Description: | castor zinc finger 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.09 |
| GC%: | 0.597015 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 34(GCTTTAAAACAA,+,0.00) |
