Difference between revisions of "TSS:Hg 102771.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|HSPC220= | |HSPC220= | ||
| − | |all_trans= | + | |all_trans=LF383687:7 MA619264:7 ENST00000492991.5:19 AF151054:19 ENST00000372447.7:25 NM_016520:25 AK057004:25 ENST00000461349.5:46 BC017570:53 BC007664:54 AF218421:57 KJ893985:78 KJ906186:78 CU675747:78 CU676010:78 LF207946:92 MA443523:92 LF346690:109 MA582267:109 |
|bA409K20.3= | |bA409K20.3= | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.13 | |cpg_percent=0.13 | ||
|distance=7 | |distance=7 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-32 |
|end=129835314 | |end=129835314 | ||
|end_of_center_position=129835307 | |end_of_center_position=129835307 | ||
|entrez_id=51759 | |entrez_id=51759 | ||
|gc_percent=0.736318 | |gc_percent=0.736318 | ||
| − | |gene_alias=HCA59 | + | |gene_alias=CSU2{{!}}HCA59{{!}}HSPC220{{!}}bA409K20.3 |
|gene_description=chromosome 9 open reading frame 78 | |gene_description=chromosome 9 open reading frame 78 | ||
|gene_id=51759 | |gene_id=51759 | ||
| − | |gene_name= | + | |gene_name=C9orf78 |
|gene_source=HGNC:24932 | |gene_source=HGNC:24932 | ||
|gene_symbol=C9orf78 | |gene_symbol=C9orf78 | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NM_016520 | |nearest_refseq=NM_016520 | ||
|nearest_unigene=Hs.278429 | |nearest_unigene=Hs.278429 | ||
| − | |num_trans= | + | |num_trans=19 |
|species=human | |species=human | ||
|start=129835299 | |start=129835299 | ||
|start_of_center_position=129835306 | |start_of_center_position=129835306 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF383687 MA619264 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_102771.1 | |tss_id=hg_102771.1 | ||
Latest revision as of 17:11, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 129835306 |
|---|---|
| End of the center position in the TSS region: | 129835307 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF383687 MA619264 |
|---|---|
| Distance: | 7 |
| Num_trans: | 19 |
| All_trans: | LF383687:7 MA619264:7 ENST00000492991.5:19 AF151054:19 ENST00000372447.7:25 NM_016520:25 AK057004:25 ENST00000461349.5:46 BC017570:53 BC007664:54 AF218421:57 KJ893985:78 KJ906186:78 CU675747:78 CU676010:78 LF207946:92 MA443523:92 LF346690:109 MA582267:109 |
TATA-Box annotation
| Distance to TSS: | -32 |
|---|---|
| Nearest PromoterID: | NM_016520 |
| Entrez ID: | 51759 |
| Nearest Unigene: | Hs.278429 |
| Nearest Refseq: | NM_016520 |
| Nearest Ensembl: | ENSG00000136819 |
| Gene Name: | C9orf78 |
| Gene Alias: | CSU2|HCA59|HSPC220|bA409K20.3 |
| Gene Description: | chromosome 9 open reading frame 78 |
| Gene Type: | protein-coding |
| CpG%: | 0.13 |
| GC%: | 0.736318 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
