Difference between revisions of "TSS:Hg 102987.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000371974. | + | |all_trans=ENST00000371974.8:0 ENST00000615505.4:0 NM_003172:0 NM_001280787:0 BC028314:0 BC071658:0 Z35093:0 AK291122:0 KJ897625:0 KJ897626:0 KR710709:0 KR710710:0 KR710711:0 DQ890823:0 DQ893977:0 KU178341:0 KU178342:0 KU178343:0 CU687126:0 ENST00000437995.1:129 ENST00000463965.1:-181 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.14 | |cpg_percent=0.14 | ||
| Line 10: | Line 10: | ||
|gc_percent=0.791045 | |gc_percent=0.791045 | ||
|gene_alias=CMT4K | |gene_alias=CMT4K | ||
| − | |gene_description= | + | |gene_description=SURF1 cytochrome c oxidase assembly factor |
|gene_id=6834 | |gene_id=6834 | ||
| − | |gene_name= | + | |gene_name=SURF1 cytochrome c oxidase assembly factor |
|gene_source=HGNC:11474 | |gene_source=HGNC:11474 | ||
|gene_symbol=SURF1 | |gene_symbol=SURF1 | ||
| − | |gene_synonyms= | + | |gene_synonyms=SHY1 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:11474 | |hgnc_mgi_id=HGNC:11474 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_003172 | |nearest_refseq=NM_003172 | ||
|nearest_unigene=Hs.512464 | |nearest_unigene=Hs.512464 | ||
| − | |num_trans= | + | |num_trans=21 |
|species=human | |species=human | ||
|start=133356448 | |start=133356448 | ||
|start_of_center_position=133356471 | |start_of_center_position=133356471 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000371974. | + | |transcript_name=ENST00000371974.8 ENST00000615505.4 NM_003172 NM_001280787 BC028314 BC071658 Z35093 AK291122 KJ897625 KJ897626 KR710709 KR710710 KR710711 DQ890823 DQ893977 KU178341 KU178342 KU178343 CU687126 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_102987.1 | |tss_id=hg_102987.1 | ||
Revision as of 17:16, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 133356471 |
|---|---|
| End of the center position in the TSS region: | 133356472 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000371974.8 ENST00000615505.4 NM_003172 NM_001280787 BC028314 BC071658 Z35093 AK291122 KJ897625 KJ897626 KR710709 KR710710 KR710711 DQ890823 DQ893977 KU178341 KU178342 KU178343 CU687126 |
|---|---|
| Distance: | 0 |
| Num_trans: | 21 |
| All_trans: | ENST00000371974.8:0 ENST00000615505.4:0 NM_003172:0 NM_001280787:0 BC028314:0 BC071658:0 Z35093:0 AK291122:0 KJ897625:0 KJ897626:0 KR710709:0 KR710710:0 KR710711:0 DQ890823:0 DQ893977:0 KU178341:0 KU178342:0 KU178343:0 CU687126:0 ENST00000437995.1:129 ENST00000463965.1:-181 |
TATA-Box annotation
| Distance to TSS: | 13 |
|---|---|
| Nearest PromoterID: | NM_001280787 |
| Entrez ID: | 6834 |
| Nearest Unigene: | Hs.512464 |
| Nearest Refseq: | NM_003172 |
| Nearest Ensembl: | ENSG00000148290 |
| Gene Name: | SURF1 cytochrome c oxidase assembly factor |
| Gene Alias: | CMT4K |
| Gene Description: | SURF1 cytochrome c oxidase assembly factor |
| Gene Type: | protein-coding |
| CpG%: | 0.14 |
| GC%: | 0.791045 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
