Difference between revisions of "TSS:Hg 102997.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000371991.3:0 | + | |all_trans=ENST00000371989.8:0 ENST00000371991.3:0 NM_001280789:0 NM_033161:0 AK299656:0 AF078866:0 AF078867:0 AK303309:0 AK295435:0 AK300004:0 AK316480:0 BC111023:8 ENST00000485435.6:-17 BX647961:20 ENST00000371982.3:29 AK315488:-36 AK293434:39 ENST00000467910.5:48 BC018741:50 AB528538:65 DQ892024:68 DQ895216:68 AM392907:68 KJ892231:69 CU676306:69 ENST00000545297.5:-84 ENST00000613129.4:-84 ENST00000618229.4:-84 NM_001280792:-84 NM_001280791:-84 NM_001280793:-84 NM_001280790:-84 Y14820:91 AK301737:474 AK310333:477 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.165 | |cpg_percent=0.165 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=0 |
|end=133376082 | |end=133376082 | ||
|end_of_center_position=133376061 | |end_of_center_position=133376061 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:11476 | |hgnc_mgi_id=HGNC:11476 | ||
|nearest_ensembl=ENSG00000148248 | |nearest_ensembl=ENSG00000148248 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_033161 |
|nearest_refseq=NM_033161 | |nearest_refseq=NM_033161 | ||
|nearest_unigene=Hs.512465 | |nearest_unigene=Hs.512465 | ||
| − | |num_trans= | + | |num_trans=35 |
|species=human | |species=human | ||
|start=133376038 | |start=133376038 | ||
|start_of_center_position=133376060 | |start_of_center_position=133376060 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-73(GCCCCTTTAAGG,-,0.00),-72(CCCCTTTAAGGC,-,0.00),-71(CCCTTTAAGGCT,+,0.00) |
| − | |transcript_name=ENST00000371991.3 | + | |transcript_name=ENST00000371989.8 ENST00000371991.3 NM_001280789 NM_033161 AK299656 AF078866 AF078867 AK303309 AK295435 AK300004 AK316480 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_102997.1 | |tss_id=hg_102997.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=B7Z605 B7Z8F3 Q5T8U5 | + | |uniprot_id=B7Z605 B7Z8F3 O15260 Q5T8U5 |
}} | }} | ||
Revision as of 17:16, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 133376060 |
|---|---|
| End of the center position in the TSS region: | 133376061 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000371989.8 ENST00000371991.3 NM_001280789 NM_033161 AK299656 AF078866 AF078867 AK303309 AK295435 AK300004 AK316480 |
|---|---|
| Distance: | 0 |
| Num_trans: | 35 |
| All_trans: | ENST00000371989.8:0 ENST00000371991.3:0 NM_001280789:0 NM_033161:0 AK299656:0 AF078866:0 AF078867:0 AK303309:0 AK295435:0 AK300004:0 AK316480:0 BC111023:8 ENST00000485435.6:-17 BX647961:20 ENST00000371982.3:29 AK315488:-36 AK293434:39 ENST00000467910.5:48 BC018741:50 AB528538:65 DQ892024:68 DQ895216:68 AM392907:68 KJ892231:69 CU676306:69 ENST00000545297.5:-84 ENST00000613129.4:-84 ENST00000618229.4:-84 NM_001280792:-84 NM_001280791:-84 NM_001280793:-84 NM_001280790:-84 Y14820:91 AK301737:474 AK310333:477 |
TATA-Box annotation
| Distance to TSS: | 0 |
|---|---|
| Nearest PromoterID: | NM_033161 |
| Entrez ID: | 6836 |
| Nearest Unigene: | Hs.512465 |
| Nearest Refseq: | NM_033161 |
| Nearest Ensembl: | ENSG00000148248 |
| Gene Name: | surfeit 4 |
| Gene Alias: | ERV29 |
| Gene Description: | surfeit 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.165 |
| GC%: | 0.791045 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -73(GCCCCTTTAAGG,-,0.00),-72(CCCCTTTAAGGC,-,0.00),-71(CCCTTTAAGGCT,+,0.00) |
