Difference between revisions of "TSS:Hg 103130.1"
From referenceTSS
| Line 6: | Line 6: | ||
|cpg_percent=0.135 | |cpg_percent=0.135 | ||
|distance=76 | |distance=76 | ||
| − | |distance_to_tss= | + | |distance_to_tss=7949 |
|end=136193738 | |end=136193738 | ||
|end_of_center_position=136193725 | |end_of_center_position=136193725 | ||
|entrez_id=8022 | |entrez_id=8022 | ||
|gc_percent=0.776119 | |gc_percent=0.776119 | ||
| − | |gene_alias=CPHD3 | + | |gene_alias=CPHD3{{!}}LIM3{{!}}M2-LHX3 |
|gene_description=LIM homeobox 3 | |gene_description=LIM homeobox 3 | ||
|gene_id=100652835 | |gene_id=100652835 | ||
| − | |gene_name= | + | |gene_name=LHX3 |
|gene_source=EntrezGene:100652835 | |gene_source=EntrezGene:100652835 | ||
|gene_symbol=RBSG2 | |gene_symbol=RBSG2 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl=ENSG00000107187 | |nearest_ensembl=ENSG00000107187 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001363746 |
|nearest_refseq=NM_014564 | |nearest_refseq=NM_014564 | ||
|nearest_unigene=Hs.148427 | |nearest_unigene=Hs.148427 | ||
| Line 29: | Line 29: | ||
|start_of_center_position=136193724 | |start_of_center_position=136193724 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-40(CCTTTTAGGCGC,+,0.00) |
|transcript_name=AB593129 | |transcript_name=AB593129 | ||
|tss_classification=yes | |tss_classification=yes | ||
Latest revision as of 17:19, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 136193724 |
|---|---|
| End of the center position in the TSS region: | 136193725 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AB593129 |
|---|---|
| Distance: | 76 |
| Num_trans: | 3 |
| All_trans: | AB593129:76 AB593131:90 AB593130:114 |
TATA-Box annotation
| Distance to TSS: | 7949 |
|---|---|
| Nearest PromoterID: | NM_001363746 |
| Entrez ID: | 8022 |
| Nearest Unigene: | Hs.148427 |
| Nearest Refseq: | NM_014564 |
| Nearest Ensembl: | ENSG00000107187 |
| Gene Name: | LHX3 |
| Gene Alias: | CPHD3|LIM3|M2-LHX3 |
| Gene Description: | LIM homeobox 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.135 |
| GC%: | 0.776119 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -40(CCTTTTAGGCGC,+,0.00) |
