Difference between revisions of "TSS:Hg 103148.1"
From referenceTSS
| Line 4: | Line 4: | ||
|TIMM15= | |TIMM15= | ||
|ZIM17= | |ZIM17= | ||
| − | |all_trans=ENST00000371739.3:0 | + | |all_trans=ENST00000371739.3:0 ENST00000371738.4:0 NM_001080849:0 NR_073565:0 LF205596:-51 MA441173:-51 BC146915:-62 BC146924:-62 BC171835:-62 LF346394:95 MA581971:95 LF346393:267 MA581970:267 |
|bA413M3.2= | |bA413M3.2= | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.16 | |cpg_percent=0.16 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=16 |
|end=136363749 | |end=136363749 | ||
|end_of_center_position=136363729 | |end_of_center_position=136363729 | ||
|entrez_id=728489 | |entrez_id=728489 | ||
|gc_percent=0.791045 | |gc_percent=0.791045 | ||
| − | |gene_alias=C9orf151 | + | |gene_alias=C9orf151{{!}}HEP{{!}}HEP1{{!}}TIMM15{{!}}ZIM17{{!}}bA413M3.2 |
|gene_description=DNL-type zinc finger | |gene_description=DNL-type zinc finger | ||
|gene_id=728489 | |gene_id=728489 | ||
| Line 24: | Line 24: | ||
|hgnc_mgi_id=HGNC:33879 | |hgnc_mgi_id=HGNC:33879 | ||
|nearest_ensembl=ENSG00000213221 | |nearest_ensembl=ENSG00000213221 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001080849 |
|nearest_refseq=NM_001080849 | |nearest_refseq=NM_001080849 | ||
|nearest_unigene=Hs.528581 | |nearest_unigene=Hs.528581 | ||
| − | |num_trans= | + | |num_trans=13 |
|species=human | |species=human | ||
|start=136363707 | |start=136363707 | ||
|start_of_center_position=136363728 | |start_of_center_position=136363728 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000371739.3 | + | |transcript_name=ENST00000371739.3 ENST00000371738.4 NM_001080849 NR_073565 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_103148.1 | |tss_id=hg_103148.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=Q5SXM7 | + | |uniprot_id=Q5SXM7 Q5SXM8 |
}} | }} | ||
Revision as of 17:20, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 136363728 |
|---|---|
| End of the center position in the TSS region: | 136363729 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000371739.3 ENST00000371738.4 NM_001080849 NR_073565 |
|---|---|
| Distance: | 0 |
| Num_trans: | 13 |
| All_trans: | ENST00000371739.3:0 ENST00000371738.4:0 NM_001080849:0 NR_073565:0 LF205596:-51 MA441173:-51 BC146915:-62 BC146924:-62 BC171835:-62 LF346394:95 MA581971:95 LF346393:267 MA581970:267 |
TATA-Box annotation
| Distance to TSS: | 16 |
|---|---|
| Nearest PromoterID: | NM_001080849 |
| Entrez ID: | 728489 |
| Nearest Unigene: | Hs.528581 |
| Nearest Refseq: | NM_001080849 |
| Nearest Ensembl: | ENSG00000213221 |
| Gene Name: | DNL-type zinc finger |
| Gene Alias: | C9orf151|HEP|HEP1|TIMM15|ZIM17|bA413M3.2 |
| Gene Description: | DNL-type zinc finger |
| Gene Type: | protein-coding |
| CpG%: | 0.16 |
| GC%: | 0.791045 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
