Difference between revisions of "TSS:Hg 103198.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000341040.11:0 | + | |all_trans=ENST00000341040.11:0 ENST00000497771.6:0 NM_001001712:0 NM_001368090:0 NM_001368089:0 NR_160514:0 NR_160515:0 NR_160516:0 NR_160517:0 ENST00000527229.5:-14 ENST00000532006.1:-14 BC133045:-14 BC144440:-14 BC144441:-14 BC171741:-14 ENST00000474369.1:33 AY301271:33 KJ900759:33 ENST00000406721.7:-411 BC040963:-411 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=0 |
|end=136742945 | |end=136742945 | ||
|end_of_center_position=136742941 | |end_of_center_position=136742941 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:20892 | |hgnc_mgi_id=HGNC:20892 | ||
|nearest_ensembl=ENSG00000187922 | |nearest_ensembl=ENSG00000187922 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_160514 |
|nearest_refseq=NM_001001712 | |nearest_refseq=NM_001001712 | ||
|nearest_unigene=Hs.98132 | |nearest_unigene=Hs.98132 | ||
| Line 27: | Line 27: | ||
|start_of_center_position=136742940 | |start_of_center_position=136742940 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000341040.11 | + | |transcript_name=ENST00000341040.11 ENST00000497771.6 NM_001001712 NM_001368090 NM_001368089 NR_160514 NR_160515 NR_160516 NR_160517 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_103198.1 | |tss_id=hg_103198.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=E9PRR3 | + | |uniprot_id=E9PRR3 Q6JVE6 |
}} | }} | ||
Revision as of 17:21, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 136742940 |
|---|---|
| End of the center position in the TSS region: | 136742941 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000341040.11 ENST00000497771.6 NM_001001712 NM_001368090 NM_001368089 NR_160514 NR_160515 NR_160516 NR_160517 |
|---|---|
| Distance: | 0 |
| Num_trans: | 20 |
| All_trans: | ENST00000341040.11:0 ENST00000497771.6:0 NM_001001712:0 NM_001368090:0 NM_001368089:0 NR_160514:0 NR_160515:0 NR_160516:0 NR_160517:0 ENST00000527229.5:-14 ENST00000532006.1:-14 BC133045:-14 BC144440:-14 BC144441:-14 BC171741:-14 ENST00000474369.1:33 AY301271:33 KJ900759:33 ENST00000406721.7:-411 BC040963:-411 |
TATA-Box annotation
| Distance to TSS: | 0 |
|---|---|
| Nearest PromoterID: | NR_160514 |
| Entrez ID: | 414332 |
| Nearest Unigene: | Hs.98132 |
| Nearest Refseq: | NM_001001712 |
| Nearest Ensembl: | ENSG00000187922 |
| Gene Name: | lipocalin 10 |
| Gene Alias: | - |
| Gene Description: | lipocalin 10 |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.666667 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
