Difference between revisions of "TSS:Hg 103240.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000443788 | + | |all_trans=ENST00000443788.1:-168 ENST00000480818.3:200 AK026081:-252 ENST00000491246.4:-254 BC014297:-255 AK315738:-263 JF432249:272 AB463628:272 CU676959:272 BC014130:-284 LF346330:-316 MA581907:-316 ENST00000428398.5:-321 ENST00000483559.5:-322 BC035355:-322 ENST00000459905.5:-330 BC031100:-330 LF346331:369 MA581908:369 ENST00000325285.8:-372 NM_018998:-372 LF205587:-404 MA441164:-404 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.15 | |cpg_percent=0.15 | ||
|distance=-168 | |distance=-168 | ||
| − | |distance_to_tss= | + | |distance_to_tss=378 |
|end=136944366 | |end=136944366 | ||
|end_of_center_position=136944361 | |end_of_center_position=136944361 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_018998 | |nearest_refseq=NM_018998 | ||
|nearest_unigene=Hs.522507 | |nearest_unigene=Hs.522507 | ||
| − | |num_trans= | + | |num_trans=23 |
|species=human | |species=human | ||
|start=136944354 | |start=136944354 | ||
|start_of_center_position=136944360 | |start_of_center_position=136944360 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000443788 | + | |transcript_name=ENST00000443788.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_103240.1 | |tss_id=hg_103240.1 | ||
Revision as of 17:22, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 136944360 |
|---|---|
| End of the center position in the TSS region: | 136944361 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000443788.1 |
|---|---|
| Distance: | -168 |
| Num_trans: | 23 |
| All_trans: | ENST00000443788.1:-168 ENST00000480818.3:200 AK026081:-252 ENST00000491246.4:-254 BC014297:-255 AK315738:-263 JF432249:272 AB463628:272 CU676959:272 BC014130:-284 LF346330:-316 MA581907:-316 ENST00000428398.5:-321 ENST00000483559.5:-322 BC035355:-322 ENST00000459905.5:-330 BC031100:-330 LF346331:369 MA581908:369 ENST00000325285.8:-372 NM_018998:-372 LF205587:-404 MA441164:-404 |
TATA-Box annotation
| Distance to TSS: | 378 |
|---|---|
| Nearest PromoterID: | NM_018998 |
| Entrez ID: | 54461 |
| Nearest Unigene: | Hs.522507 |
| Nearest Refseq: | NM_018998 |
| Nearest Ensembl: | ENSG00000159069 |
| Gene Name: | F-box and WD repeat domain containing 5 |
| Gene Alias: | Fbw5 |
| Gene Description: | F-box and WD repeat domain containing 5 |
| Gene Type: | protein-coding |
| CpG%: | 0.15 |
| GC%: | 0.830846 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
