Difference between revisions of "TSS:Hg 103427.1"
From referenceTSS
| Line 3: | Line 3: | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.17 | |cpg_percent=0.17 | ||
| − | |distance= | + | |distance=NA |
|distance_to_tss=-320 | |distance_to_tss=-320 | ||
|end=932070 | |end=932070 | ||
| Line 9: | Line 9: | ||
|entrez_id=23185 | |entrez_id=23185 | ||
|gc_percent=0.820896 | |gc_percent=0.820896 | ||
| − | |gene_alias=KIAA0217 | + | |gene_alias=KIAA0217{{!}}LARP5 |
|gene_description=La ribonucleoprotein domain family member 4B | |gene_description=La ribonucleoprotein domain family member 4B | ||
|gene_name=LARP4B | |gene_name=LARP4B | ||
| Line 22: | Line 22: | ||
|start_of_center_position=932024 | |start_of_center_position=932024 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=67(GCCCCTTAAAGA,-,0.00),68(CCCCTTAAAGAC,+,0.00),70(CCTTAAAGACCC,+,0.00) |
|transcript_name= | |transcript_name= | ||
|tss_classification=yes | |tss_classification=yes | ||
Latest revision as of 17:26, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 932024 |
|---|---|
| End of the center position in the TSS region: | 932025 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | -320 |
|---|---|
| Nearest PromoterID: | NM_015155 |
| Entrez ID: | 23185 |
| Nearest Unigene: | Hs.159069 |
| Nearest Refseq: | NM_015155 |
| Nearest Ensembl: | ENSG00000107929 |
| Gene Name: | LARP4B |
| Gene Alias: | KIAA0217|LARP5 |
| Gene Description: | La ribonucleoprotein domain family member 4B |
| Gene Type: | protein-coding |
| CpG%: | 0.17 |
| GC%: | 0.820896 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 67(GCCCCTTAAAGA,-,0.00),68(CCCCTTAAAGAC,+,0.00),70(CCTTAAAGACCC,+,0.00) |
