Difference between revisions of "TSS:Hg 103434.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|IPPI1= | |IPPI1= | ||
| − | |all_trans=BC018045:0 BC046483:0 BC050720:-2 ENST00000358220.5 | + | |all_trans=BC018045:0 BC046483:0 BC050720:-2 ENST00000358220.5:437 AB023199:437 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-194 |
|end=1049101 | |end=1049101 | ||
|end_of_center_position=1049080 | |end_of_center_position=1049080 | ||
|entrez_id=3422 | |entrez_id=3422 | ||
|gc_percent=0.686567 | |gc_percent=0.686567 | ||
| − | |gene_alias=IPP1 | + | |gene_alias=IPP1{{!}}IPPI1 |
|gene_description=isopentenyl-diphosphate delta isomerase 1 | |gene_description=isopentenyl-diphosphate delta isomerase 1 | ||
|gene_name=IDI1 | |gene_name=IDI1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000067064 | |nearest_ensembl=ENSG00000067064 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001317956 |
|nearest_refseq=NM_004508 | |nearest_refseq=NM_004508 | ||
|nearest_unigene=Hs.283652 | |nearest_unigene=Hs.283652 | ||
| − | |num_trans= | + | |num_trans=5 |
|species=human | |species=human | ||
|start=1049058 | |start=1049058 | ||
|start_of_center_position=1049079 | |start_of_center_position=1049079 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=60(GCGCCTTTAAGG,-,0.00),61(CGCCTTTAAGGG,-,0.00),62(GCCTTTAAGGGG,+,0.00),62(GCCTTTAAGGGG,-,0.00),63(CCTTTAAGGGGG,+,0.00) |
|transcript_name=BC018045 BC046483 | |transcript_name=BC018045 BC046483 | ||
|tss_classification=yes | |tss_classification=yes | ||
Latest revision as of 17:26, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 1049079 |
|---|---|
| End of the center position in the TSS region: | 1049080 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC018045 BC046483 |
|---|---|
| Distance: | 0 |
| Num_trans: | 5 |
| All_trans: | BC018045:0 BC046483:0 BC050720:-2 ENST00000358220.5:437 AB023199:437 |
TATA-Box annotation
| Distance to TSS: | -194 |
|---|---|
| Nearest PromoterID: | NM_001317956 |
| Entrez ID: | 3422 |
| Nearest Unigene: | Hs.283652 |
| Nearest Refseq: | NM_004508 |
| Nearest Ensembl: | ENSG00000067064 |
| Gene Name: | IDI1 |
| Gene Alias: | IPP1|IPPI1 |
| Gene Description: | isopentenyl-diphosphate delta isomerase 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.115 |
| GC%: | 0.686567 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 60(GCGCCTTTAAGG,-,0.00),61(CGCCTTTAAGGG,-,0.00),62(GCCTTTAAGGGG,+,0.00),62(GCCTTTAAGGGG,-,0.00),63(CCTTTAAGGGGG,+,0.00) |
