Difference between revisions of "TSS:Hg 103511.1"
From referenceTSS
| Line 7: | Line 7: | ||
|ST12= | |ST12= | ||
|ZF9= | |ZF9= | ||
| + | |all_trans=LF330740:123 MA566317:123 LF330739:232 MA566316:232 | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.125 | |cpg_percent=0.125 | ||
| − | |distance= | + | |distance=123 |
|distance_to_tss=-273 | |distance_to_tss=-273 | ||
|end=3785562 | |end=3785562 | ||
| Line 15: | Line 16: | ||
|entrez_id=1316 | |entrez_id=1316 | ||
|gc_percent=0.686567 | |gc_percent=0.686567 | ||
| − | |gene_alias=BCD1 | + | |gene_alias=BCD1{{!}}CBA1{{!}}COPEB{{!}}CPBP{{!}}GBF{{!}}PAC1{{!}}ST12{{!}}ZF9 |
|gene_description=Kruppel like factor 6 | |gene_description=Kruppel like factor 6 | ||
|gene_name=KLF6 | |gene_name=KLF6 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000067082 | |nearest_ensembl=ENSG00000067082 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001160125 |
|nearest_refseq=NM_001300 | |nearest_refseq=NM_001300 | ||
|nearest_unigene=Hs.4055 | |nearest_unigene=Hs.4055 | ||
| − | |num_trans= | + | |num_trans=4 |
|species=human | |species=human | ||
|start=3785546 | |start=3785546 | ||
|start_of_center_position=3785554 | |start_of_center_position=3785554 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-33(GGGTATATAAGG,-,0.00) |
| − | |transcript_name= | + | |transcript_name=LF330740 MA566317 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_103511.1 | |tss_id=hg_103511.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 17:28, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 3785554 |
|---|---|
| End of the center position in the TSS region: | 3785555 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF330740 MA566317 |
|---|---|
| Distance: | 123 |
| Num_trans: | 4 |
| All_trans: | LF330740:123 MA566317:123 LF330739:232 MA566316:232 |
TATA-Box annotation
| Distance to TSS: | -273 |
|---|---|
| Nearest PromoterID: | NM_001160125 |
| Entrez ID: | 1316 |
| Nearest Unigene: | Hs.4055 |
| Nearest Refseq: | NM_001300 |
| Nearest Ensembl: | ENSG00000067082 |
| Gene Name: | KLF6 |
| Gene Alias: | BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9 |
| Gene Description: | Kruppel like factor 6 |
| Gene Type: | protein-coding |
| CpG%: | 0.125 |
| GC%: | 0.686567 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -33(GGGTATATAAGG,-,0.00) |
