Difference between revisions of "TSS:Hg 103716.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000414894 | + | |all_trans=ENST00000414894.1:43 ENST00000449648.1:46 ENST00000607982.5:172 ENST00000608526.5:172 ENST00000623015.3:172 ENST00000613985.4:172 ENST00000615210.5:172 ENST00000625102.3:178 ENST00000624974.3:198 ENST00000623160.3:198 ENST00000624678.3:198 ENST00000625147.3:228 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
| Line 9: | Line 9: | ||
|entrez_id=5588 | |entrez_id=5588 | ||
|gc_percent=0.492537 | |gc_percent=0.492537 | ||
| − | |gene_alias=PRKCT | + | |gene_alias=PRKCT{{!}}nPKC-theta |
|gene_description=protein kinase C theta | |gene_description=protein kinase C theta | ||
| − | |gene_id= | + | |gene_id=439949 |
|gene_name=PRKCQ antisense RNA 1 | |gene_name=PRKCQ antisense RNA 1 | ||
|gene_source=HGNC:44689 | |gene_source=HGNC:44689 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_006257 | |nearest_refseq=NM_006257 | ||
|nearest_unigene=Hs.498570 | |nearest_unigene=Hs.498570 | ||
| − | |num_trans= | + | |num_trans=12 |
|species=human | |species=human | ||
|start=6583616 | |start=6583616 | ||
|start_of_center_position=6583624 | |start_of_center_position=6583624 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000414894 | + | |transcript_name=ENST00000414894.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_103716.1 | |tss_id=hg_103716.1 | ||
Revision as of 17:33, 15 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 6583624 |
|---|---|
| End of the center position in the TSS region: | 6583625 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000414894.1 |
|---|---|
| Distance: | 43 |
| Num_trans: | 12 |
| All_trans: | ENST00000414894.1:43 ENST00000449648.1:46 ENST00000607982.5:172 ENST00000608526.5:172 ENST00000623015.3:172 ENST00000613985.4:172 ENST00000615210.5:172 ENST00000625102.3:178 ENST00000624974.3:198 ENST00000623160.3:198 ENST00000624678.3:198 ENST00000625147.3:228 |
TATA-Box annotation
| Distance to TSS: | -2979 |
|---|---|
| Nearest PromoterID: | NM_001323265 |
| Entrez ID: | 5588 |
| Nearest Unigene: | Hs.498570 |
| Nearest Refseq: | NM_006257 |
| Nearest Ensembl: | ENSG00000065675 |
| Gene Name: | PRKCQ antisense RNA 1 |
| Gene Alias: | PRKCT|nPKC-theta |
| Gene Description: | protein kinase C theta |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.492537 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
