Difference between revisions of "TSS:Hg 103868.1"
From referenceTSS
| Line 6: | Line 6: | ||
|ETR3= | |ETR3= | ||
|NAPOR= | |NAPOR= | ||
| − | |all_trans=ENST00000609870.5:0 ENST00000609692.5:0 ENST00000354897.3 | + | |all_trans=ENST00000609870.5:0 ENST00000609692.5:0 ENST00000354897.3:0 AK310038:0 AK302681:0 AK304216:-20 AK295511:36 AK316354:-198 AF432906:-298 ENST00000608830.5:-336 AK293164:-336 AF036956:-362 AK299992:-379 AK297313:-385 ENST00000399850.7:-446 ENST00000417956.6:-446 NM_001083591:-446 NM_001025076:-446 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.05 | |cpg_percent=0.05 | ||
| Line 15: | Line 15: | ||
|entrez_id=10659 | |entrez_id=10659 | ||
|gc_percent=0.557214 | |gc_percent=0.557214 | ||
| − | |gene_alias=BRUNOL3 | + | |gene_alias=BRUNOL3{{!}}CELF-2{{!}}CUG-BP2{{!}}CUGBP2{{!}}ETR-3{{!}}ETR3{{!}}NAPOR |
| − | |gene_description= | + | |gene_description=CUGBP Elav-like family member 2 |
|gene_id=10659 | |gene_id=10659 | ||
| − | |gene_name= | + | |gene_name=CUGBP Elav-like family member 2 |
|gene_source=HGNC:2550 | |gene_source=HGNC:2550 | ||
|gene_symbol=CELF2 | |gene_symbol=CELF2 | ||
| Line 28: | Line 28: | ||
|nearest_refseq=NM_006561 | |nearest_refseq=NM_006561 | ||
|nearest_unigene=Hs.309288 | |nearest_unigene=Hs.309288 | ||
| − | |num_trans= | + | |num_trans=18 |
|species=human | |species=human | ||
|start=11165475 | |start=11165475 | ||
|start_of_center_position=11165483 | |start_of_center_position=11165483 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000609870.5 ENST00000609692.5 ENST00000354897.3 | + | |transcript_name=ENST00000609870.5 ENST00000609692.5 ENST00000354897.3 AK310038 AK302681 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_103868.1 | |tss_id=hg_103868.1 | ||
Revision as of 17:36, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 11165483 |
|---|---|
| End of the center position in the TSS region: | 11165484 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000609870.5 ENST00000609692.5 ENST00000354897.3 AK310038 AK302681 |
|---|---|
| Distance: | 0 |
| Num_trans: | 18 |
| All_trans: | ENST00000609870.5:0 ENST00000609692.5:0 ENST00000354897.3:0 AK310038:0 AK302681:0 AK304216:-20 AK295511:36 AK316354:-198 AF432906:-298 ENST00000608830.5:-336 AK293164:-336 AF036956:-362 AK299992:-379 AK297313:-385 ENST00000399850.7:-446 ENST00000417956.6:-446 NM_001083591:-446 NM_001025076:-446 |
TATA-Box annotation
| Distance to TSS: | 454 |
|---|---|
| Nearest PromoterID: | NM_001083591 |
| Entrez ID: | 10659 |
| Nearest Unigene: | Hs.309288 |
| Nearest Refseq: | NM_006561 |
| Nearest Ensembl: | ENSG00000048740 |
| Gene Name: | CUGBP Elav-like family member 2 |
| Gene Alias: | BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR |
| Gene Description: | CUGBP Elav-like family member 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.05 |
| GC%: | 0.557214 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
