Difference between revisions of "TSS:Hg 103908.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000441368.5:0 | + | |all_trans=ENST00000441368.5:0 ENST00000298428.14:0 ENST00000475268.5:0 ENST00000495368.1:0 ENST00000304267.12:0 ENST00000472221.5:0 NM_018144:0 AK301841:0 AK292295:0 BC026179:0 AF346603:0 AK057532:0 AK022640:0 ENST00000379033.7:-2 NR_024576:-2 NR_024577:-2 NM_001142628:-2 NM_001142627:-2 ENST00000379051.5:-6 ENST00000379020.8:6 ENST00000379017.7:12 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.15 | |cpg_percent=0.15 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=5 |
|end=12129721 | |end=12129721 | ||
|end_of_center_position=12129682 | |end_of_center_position=12129682 | ||
| Line 10: | Line 10: | ||
|gc_percent=0.79602 | |gc_percent=0.79602 | ||
|gene_alias=- | |gene_alias=- | ||
| − | |gene_description= | + | |gene_description=SEC61 translocon alpha 2 subunit |
|gene_id=55176 | |gene_id=55176 | ||
| − | |gene_name= | + | |gene_name=SEC61 translocon subunit alpha 2 |
|gene_source=HGNC:17702 | |gene_source=HGNC:17702 | ||
|gene_symbol=SEC61A2 | |gene_symbol=SEC61A2 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:17702 | |hgnc_mgi_id=HGNC:17702 | ||
|nearest_ensembl=ENSG00000065665 | |nearest_ensembl=ENSG00000065665 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_018144 |
|nearest_refseq=NM_018144 | |nearest_refseq=NM_018144 | ||
|nearest_unigene=Hs.112955 | |nearest_unigene=Hs.112955 | ||
| − | |num_trans= | + | |num_trans=21 |
|species=human | |species=human | ||
|start=12129642 | |start=12129642 | ||
|start_of_center_position=12129681 | |start_of_center_position=12129681 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000441368.5 ENST00000475268.5 | + | |transcript_name=ENST00000441368.5 ENST00000298428.14 ENST00000475268.5 ENST00000495368.1 ENST00000304267.12 ENST00000472221.5 NM_018144 AK301841 AK292295 BC026179 AF346603 AK057532 AK022640 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_103908.1 | |tss_id=hg_103908.1 | ||
Revision as of 17:37, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 12129681 |
|---|---|
| End of the center position in the TSS region: | 12129682 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000441368.5 ENST00000298428.14 ENST00000475268.5 ENST00000495368.1 ENST00000304267.12 ENST00000472221.5 NM_018144 AK301841 AK292295 BC026179 AF346603 AK057532 AK022640 |
|---|---|
| Distance: | 0 |
| Num_trans: | 21 |
| All_trans: | ENST00000441368.5:0 ENST00000298428.14:0 ENST00000475268.5:0 ENST00000495368.1:0 ENST00000304267.12:0 ENST00000472221.5:0 NM_018144:0 AK301841:0 AK292295:0 BC026179:0 AF346603:0 AK057532:0 AK022640:0 ENST00000379033.7:-2 NR_024576:-2 NR_024577:-2 NM_001142628:-2 NM_001142627:-2 ENST00000379051.5:-6 ENST00000379020.8:6 ENST00000379017.7:12 |
TATA-Box annotation
| Distance to TSS: | 5 |
|---|---|
| Nearest PromoterID: | NM_018144 |
| Entrez ID: | 55176 |
| Nearest Unigene: | Hs.112955 |
| Nearest Refseq: | NM_018144 |
| Nearest Ensembl: | ENSG00000065665 |
| Gene Name: | SEC61 translocon subunit alpha 2 |
| Gene Alias: | - |
| Gene Description: | SEC61 translocon alpha 2 subunit |
| Gene Type: | protein-coding |
| CpG%: | 0.15 |
| GC%: | 0.79602 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
