Difference between revisions of "TSS:Hg 103945.1"
From referenceTSS
| Line 6: | Line 6: | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
| − | |distance= | + | |distance=NA |
|distance_to_tss=-64 | |distance_to_tss=-64 | ||
|end=13300207 | |end=13300207 | ||
| Line 12: | Line 12: | ||
|entrez_id=5264 | |entrez_id=5264 | ||
|gc_percent=0.651741 | |gc_percent=0.651741 | ||
| − | |gene_alias=LN1 | + | |gene_alias=LN1{{!}}LNAP1{{!}}PAHX{{!}}PHYH1{{!}}RD |
|gene_description=phytanoyl-CoA 2-hydroxylase | |gene_description=phytanoyl-CoA 2-hydroxylase | ||
|gene_name=PHYH | |gene_name=PHYH | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000107537 | |nearest_ensembl=ENSG00000107537 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001323083 |
|nearest_refseq=NM_006214 | |nearest_refseq=NM_006214 | ||
|nearest_unigene=Hs.498732 | |nearest_unigene=Hs.498732 | ||
| Line 25: | Line 25: | ||
|start_of_center_position=13300194 | |start_of_center_position=13300194 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=79(CTTTTTAAAAAG,+,0.00),79(CTTTTTAAAAAG,-,0.00) |
|transcript_name= | |transcript_name= | ||
|tss_classification=yes | |tss_classification=yes | ||
Latest revision as of 17:38, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 13300194 |
|---|---|
| End of the center position in the TSS region: | 13300195 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | -64 |
|---|---|
| Nearest PromoterID: | NM_001323083 |
| Entrez ID: | 5264 |
| Nearest Unigene: | Hs.498732 |
| Nearest Refseq: | NM_006214 |
| Nearest Ensembl: | ENSG00000107537 |
| Gene Name: | PHYH |
| Gene Alias: | LN1|LNAP1|PAHX|PHYH1|RD |
| Gene Description: | phytanoyl-CoA 2-hydroxylase |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.651741 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 79(CTTTTTAAAAAG,+,0.00),79(CTTTTTAAAAAG,-,0.00) |
