Difference between revisions of "TSS:Hg 104056.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|HEL113= | |HEL113= | ||
| − | |all_trans=ENST00000497849.1:2 | + | |all_trans=ENST00000497849.1:2 LF205547:53 MA441124:53 ENST00000478746.1:-295 BC066956:-339 ENST00000224237.9:411 ENST00000487938.5:411 AK222507:411 AK222602:411 EU794672:411 AK056766:411 AK091813:411 AK097336:411 AK098444:411 X16478:412 AK222482:413 ENST00000485947.1:424 AF328728:428 BC030573:432 BC000163:432 GQ900939:432 Z19554:437 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
|distance=2 | |distance=2 | ||
| − | |distance_to_tss= | + | |distance_to_tss=597 |
|end=17228867 | |end=17228867 | ||
|end_of_center_position=17228839 | |end_of_center_position=17228839 | ||
|entrez_id=7431 | |entrez_id=7431 | ||
|gc_percent=0.671642 | |gc_percent=0.671642 | ||
| − | |gene_alias= | + | |gene_alias=- |
|gene_description=vimentin | |gene_description=vimentin | ||
|gene_id=7431 | |gene_id=7431 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_003380 | |nearest_refseq=NM_003380 | ||
|nearest_unigene=Hs.455493 | |nearest_unigene=Hs.455493 | ||
| − | |num_trans= | + | |num_trans=22 |
|species=human | |species=human | ||
|start=17228809 | |start=17228809 | ||
|start_of_center_position=17228838 | |start_of_center_position=17228838 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000497849 | + | |transcript_name=ENST00000497849.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_104056.1 | |tss_id=hg_104056.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=A0A1B0GVG8 |
}} | }} | ||
Revision as of 17:41, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 17228838 |
|---|---|
| End of the center position in the TSS region: | 17228839 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000497849.1 |
|---|---|
| Distance: | 2 |
| Num_trans: | 22 |
| All_trans: | ENST00000497849.1:2 LF205547:53 MA441124:53 ENST00000478746.1:-295 BC066956:-339 ENST00000224237.9:411 ENST00000487938.5:411 AK222507:411 AK222602:411 EU794672:411 AK056766:411 AK091813:411 AK097336:411 AK098444:411 X16478:412 AK222482:413 ENST00000485947.1:424 AF328728:428 BC030573:432 BC000163:432 GQ900939:432 Z19554:437 |
TATA-Box annotation
| Distance to TSS: | 597 |
|---|---|
| Nearest PromoterID: | NM_003380 |
| Entrez ID: | 7431 |
| Nearest Unigene: | Hs.455493 |
| Nearest Refseq: | NM_003380 |
| Nearest Ensembl: | ENSG00000026025 |
| Gene Name: | vimentin |
| Gene Alias: | - |
| Gene Description: | vimentin |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.671642 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
