Difference between revisions of "TSS:Hg 104118.1"
From referenceTSS
| Line 2: | Line 2: | ||
|CAVB2= | |CAVB2= | ||
|MYSB= | |MYSB= | ||
| − | |all_trans=ENST00000468177.1:0 ENST00000467034 | + | |all_trans=ENST00000468177.1:0 ENST00000467034.1:0 AK296471:0 AK311694:0 ENST00000643096.2:3 ENST00000645287.1:3 AK307526:3 ENST00000352115.10:-6 ENST00000377328.5:-6 AF423191:-6 AY393860:-6 AY675091:-6 AF137376:-7 KJ896530:-8 BC136409:-29 S60415:-66 ENST00000644004.1:71 AK293837:71 ENST00000282343.13:148 ENST00000324631.13:-319 NM_001167945:-319 NM_201572:-319 NM_201571:-319 NM_201597:-319 NM_201593:-319 NM_201596:-319 AF423190:370 AY393858:370 AY393861:370 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.125 | |cpg_percent=0.125 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=352 |
|end=18140810 | |end=18140810 | ||
|end_of_center_position=18140777 | |end_of_center_position=18140777 | ||
|entrez_id=783 | |entrez_id=783 | ||
|gc_percent=0.706468 | |gc_percent=0.706468 | ||
| − | |gene_alias=CACNLB2 | + | |gene_alias=CACNLB2{{!}}CAVB2{{!}}MYSB |
|gene_description=calcium voltage-gated channel auxiliary subunit beta 2 | |gene_description=calcium voltage-gated channel auxiliary subunit beta 2 | ||
|gene_id=783 | |gene_id=783 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:1402 | |hgnc_mgi_id=HGNC:1402 | ||
|nearest_ensembl=ENSG00000165995 | |nearest_ensembl=ENSG00000165995 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_201593 |
|nearest_refseq=NM_000724 | |nearest_refseq=NM_000724 | ||
|nearest_unigene=Hs.59093 | |nearest_unigene=Hs.59093 | ||
| − | |num_trans= | + | |num_trans=29 |
|species=human | |species=human | ||
|start=18140742 | |start=18140742 | ||
|start_of_center_position=18140776 | |start_of_center_position=18140776 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000468177.1 ENST00000467034 | + | |transcript_name=ENST00000468177.1 ENST00000467034.1 AK296471 AK311694 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_104118.1 | |tss_id=hg_104118.1 | ||
Revision as of 17:43, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 18140776 |
|---|---|
| End of the center position in the TSS region: | 18140777 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000468177.1 ENST00000467034.1 AK296471 AK311694 |
|---|---|
| Distance: | 0 |
| Num_trans: | 29 |
| All_trans: | ENST00000468177.1:0 ENST00000467034.1:0 AK296471:0 AK311694:0 ENST00000643096.2:3 ENST00000645287.1:3 AK307526:3 ENST00000352115.10:-6 ENST00000377328.5:-6 AF423191:-6 AY393860:-6 AY675091:-6 AF137376:-7 KJ896530:-8 BC136409:-29 S60415:-66 ENST00000644004.1:71 AK293837:71 ENST00000282343.13:148 ENST00000324631.13:-319 NM_001167945:-319 NM_201572:-319 NM_201571:-319 NM_201597:-319 NM_201593:-319 NM_201596:-319 AF423190:370 AY393858:370 AY393861:370 |
TATA-Box annotation
| Distance to TSS: | 352 |
|---|---|
| Nearest PromoterID: | NM_201593 |
| Entrez ID: | 783 |
| Nearest Unigene: | Hs.59093 |
| Nearest Refseq: | NM_000724 |
| Nearest Ensembl: | ENSG00000165995 |
| Gene Name: | calcium voltage-gated channel auxiliary subunit beta 2 |
| Gene Alias: | CACNLB2|CAVB2|MYSB |
| Gene Description: | calcium voltage-gated channel auxiliary subunit beta 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.125 |
| GC%: | 0.706468 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
