Difference between revisions of "TSS:Hg 10425.1"
From referenceTSS
| Line 6: | Line 6: | ||
|RIZ1= | |RIZ1= | ||
|RIZ2= | |RIZ2= | ||
| + | |all_trans=LF357262:188 MA592839:188 | ||
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| − | |distance= | + | |distance=188 |
| − | |distance_to_tss= | + | |distance_to_tss=1247 |
|end=13701438 | |end=13701438 | ||
|end_of_center_position=13701435 | |end_of_center_position=13701435 | ||
|entrez_id=7799 | |entrez_id=7799 | ||
|gc_percent=0.328358 | |gc_percent=0.328358 | ||
| − | |gene_alias=HUMHOXY1 | + | |gene_alias=HUMHOXY1{{!}}KMT8{{!}}KMT8A{{!}}MTB-ZF{{!}}RIZ{{!}}RIZ1{{!}}RIZ2 |
|gene_description=PR/SET domain 2 | |gene_description=PR/SET domain 2 | ||
|gene_name=PRDM2 | |gene_name=PRDM2 | ||
| Line 22: | Line 23: | ||
|nearest_refseq=NM_012231 | |nearest_refseq=NM_012231 | ||
|nearest_unigene=Hs.371823 | |nearest_unigene=Hs.371823 | ||
| − | |num_trans= | + | |num_trans=2 |
|species=human | |species=human | ||
|start=13701431 | |start=13701431 | ||
|start_of_center_position=13701434 | |start_of_center_position=13701434 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-33(TTTTTTAAAAGG,-,0.00),-32(TTTTTAAAAGGC,+,0.00) |
| − | |transcript_name= | + | |transcript_name=LF357262 MA592839 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_10425.1 | |tss_id=hg_10425.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 17:46, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 13701434 |
|---|---|
| End of the center position in the TSS region: | 13701435 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF357262 MA592839 |
|---|---|
| Distance: | 188 |
| Num_trans: | 2 |
| All_trans: | LF357262:188 MA592839:188 |
TATA-Box annotation
| Distance to TSS: | 1247 |
|---|---|
| Nearest PromoterID: | NM_001135610 |
| Entrez ID: | 7799 |
| Nearest Unigene: | Hs.371823 |
| Nearest Refseq: | NM_012231 |
| Nearest Ensembl: | ENSG00000116731 |
| Gene Name: | PRDM2 |
| Gene Alias: | HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 |
| Gene Description: | PR/SET domain 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.328358 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -33(TTTTTTAAAAGG,-,0.00),-32(TTTTTAAAAGGC,+,0.00) |
