Difference between revisions of "TSS:Hg 104720.1"
From referenceTSS
| Line 7: | Line 7: | ||
|ZNF33= | |ZNF33= | ||
|ZZAPK= | |ZZAPK= | ||
| − | |all_trans=ENST00000307441.13:148 ENST00000374618.7 | + | |all_trans=ENST00000307441.13:148 ENST00000374618.7:148 NM_001278178:148 NM_001278173:148 ENST00000628825.2:153 AK303445:155 AK292844:167 ENST00000458705.6:168 ENST00000432900.7:173 NM_006974:173 NM_001324175:173 NM_001278179:173 NM_001278176:173 NM_001324178:173 NM_001324177:173 NM_006954:173 NR_136710:173 NR_136709:173 NM_001278175:173 NM_001278174:173 NM_001324176:173 NM_001278177:173 NM_001278171:173 NM_001278170:173 BC017760:179 ENST00000469037.2:184 AK027057:184 ENST00000476504.5:191 ENST00000478556.1:197 D31763:211 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.06 | |cpg_percent=0.06 | ||
| Line 16: | Line 16: | ||
|entrez_id=7581 | |entrez_id=7581 | ||
|gc_percent=0.616915 | |gc_percent=0.616915 | ||
| − | |gene_alias=KOX2 | + | |gene_alias=KOX2{{!}}KOX31{{!}}KOX5{{!}}NF11A{{!}}ZNF11{{!}}ZNF11A{{!}}ZNF33{{!}}ZZAPK |
|gene_description=zinc finger protein 33A | |gene_description=zinc finger protein 33A | ||
|gene_id=7581 | |gene_id=7581 | ||
| Line 26: | Line 26: | ||
|hgnc_mgi_id=HGNC:13096 | |hgnc_mgi_id=HGNC:13096 | ||
|nearest_ensembl=ENSG00000189180 | |nearest_ensembl=ENSG00000189180 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001278178 |
|nearest_refseq=NM_006954 | |nearest_refseq=NM_006954 | ||
|nearest_unigene=Hs.435774 | |nearest_unigene=Hs.435774 | ||
| − | |num_trans= | + | |num_trans=30 |
|species=human | |species=human | ||
|start=38010484 | |start=38010484 | ||
|start_of_center_position=38010493 | |start_of_center_position=38010493 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000307441.13 ENST00000374618.7 | + | |transcript_name=ENST00000307441.13 ENST00000374618.7 NM_001278178 NM_001278173 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_104720.1 | |tss_id=hg_104720.1 | ||
Revision as of 17:57, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 38010493 |
|---|---|
| End of the center position in the TSS region: | 38010494 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000307441.13 ENST00000374618.7 NM_001278178 NM_001278173 |
|---|---|
| Distance: | 148 |
| Num_trans: | 30 |
| All_trans: | ENST00000307441.13:148 ENST00000374618.7:148 NM_001278178:148 NM_001278173:148 ENST00000628825.2:153 AK303445:155 AK292844:167 ENST00000458705.6:168 ENST00000432900.7:173 NM_006974:173 NM_001324175:173 NM_001278179:173 NM_001278176:173 NM_001324178:173 NM_001324177:173 NM_006954:173 NR_136710:173 NR_136709:173 NM_001278175:173 NM_001278174:173 NM_001324176:173 NM_001278177:173 NM_001278171:173 NM_001278170:173 BC017760:179 ENST00000469037.2:184 AK027057:184 ENST00000476504.5:191 ENST00000478556.1:197 D31763:211 |
TATA-Box annotation
| Distance to TSS: | -157 |
|---|---|
| Nearest PromoterID: | NM_001278178 |
| Entrez ID: | 7581 |
| Nearest Unigene: | Hs.435774 |
| Nearest Refseq: | NM_006954 |
| Nearest Ensembl: | ENSG00000189180 |
| Gene Name: | zinc finger protein 33A |
| Gene Alias: | KOX2|KOX31|KOX5|NF11A|ZNF11|ZNF11A|ZNF33|ZZAPK |
| Gene Description: | zinc finger protein 33A |
| Gene Type: | protein-coding |
| CpG%: | 0.06 |
| GC%: | 0.616915 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
