Difference between revisions of "TSS:Hg 104758.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|OK/SW-cl.23= | |OK/SW-cl.23= | ||
| − | |all_trans=ENST00000442526.2 | + | |all_trans=ENST00000442526.2:103 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
|distance=103 | |distance=103 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-3180 |
|end=43420635 | |end=43420635 | ||
|end_of_center_position=43420620 | |end_of_center_position=43420620 | ||
| − | |entrez_id= | + | |entrez_id=109616985 |
|gc_percent=0.726368 | |gc_percent=0.726368 | ||
| − | |gene_alias= | + | |gene_alias=- |
| − | |gene_description= | + | |gene_description=small nucleolar RNA, C/D box 3J |
|gene_id=105378272 | |gene_id=105378272 | ||
| − | |gene_name= | + | |gene_name=SNORD3J |
|gene_source=EntrezGene:105378272 | |gene_source=EntrezGene:105378272 | ||
|gene_symbol=LOC105378272 | |gene_symbol=LOC105378272 | ||
|gene_synonyms= | |gene_synonyms= | ||
| − | |gene_type= | + | |gene_type=snoRNA |
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|mcs94-1= | |mcs94-1= | ||
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSG00000221400 |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_145740 |
| − | |nearest_refseq= | + | |nearest_refseq=NR_145740 |
| − | |nearest_unigene= | + | |nearest_unigene= |
| − | |num_trans= | + | |num_trans=1 |
|species=human | |species=human | ||
|start=43420604 | |start=43420604 | ||
|start_of_center_position=43420619 | |start_of_center_position=43420619 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000442526.2 | + | |transcript_name=ENST00000442526.2 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_104758.1 | |tss_id=hg_104758.1 | ||
Latest revision as of 17:58, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 43420619 |
|---|---|
| End of the center position in the TSS region: | 43420620 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000442526.2 |
|---|---|
| Distance: | 103 |
| Num_trans: | 1 |
| All_trans: | ENST00000442526.2:103 |
TATA-Box annotation
| Distance to TSS: | -3180 |
|---|---|
| Nearest PromoterID: | NR_145740 |
| Entrez ID: | 109616985 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_145740 |
| Nearest Ensembl: | ENSG00000221400 |
| Gene Name: | SNORD3J |
| Gene Alias: | - |
| Gene Description: | small nucleolar RNA, C/D box 3J |
| Gene Type: | snoRNA |
| CpG%: | 0.11 |
| GC%: | 0.726368 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
