Difference between revisions of "TSS:Hg 105165.1"
From referenceTSS
| Line 3: | Line 3: | ||
|CMT4E= | |CMT4E= | ||
|KROX20= | |KROX20= | ||
| + | |all_trans=LF213187:212 MA448764:212 | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
| − | |distance= | + | |distance=212 |
| − | |distance_to_tss=- | + | |distance_to_tss=-154 |
|end=62816535 | |end=62816535 | ||
|end_of_center_position=62816521 | |end_of_center_position=62816521 | ||
|entrez_id=1959 | |entrez_id=1959 | ||
|gc_percent=0.716418 | |gc_percent=0.716418 | ||
| − | |gene_alias=AT591 | + | |gene_alias=AT591{{!}}CHN1{{!}}CMT1D{{!}}CMT4E{{!}}KROX20 |
|gene_description=early growth response 2 | |gene_description=early growth response 2 | ||
|gene_name=EGR2 | |gene_name=EGR2 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000122877 | |nearest_ensembl=ENSG00000122877 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001136177 |
|nearest_refseq=NM_000399 | |nearest_refseq=NM_000399 | ||
|nearest_unigene=Hs.1395 | |nearest_unigene=Hs.1395 | ||
| − | |num_trans= | + | |num_trans=2 |
|species=human | |species=human | ||
|start=62816505 | |start=62816505 | ||
|start_of_center_position=62816520 | |start_of_center_position=62816520 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-94(GCCCATATATGG,-,0.00),-92(CCATATATGGAC,+,0.00) |
| − | |transcript_name= | + | |transcript_name=LF213187 MA448764 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_105165.1 | |tss_id=hg_105165.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 18:07, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 62816520 |
|---|---|
| End of the center position in the TSS region: | 62816521 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF213187 MA448764 |
|---|---|
| Distance: | 212 |
| Num_trans: | 2 |
| All_trans: | LF213187:212 MA448764:212 |
TATA-Box annotation
| Distance to TSS: | -154 |
|---|---|
| Nearest PromoterID: | NM_001136177 |
| Entrez ID: | 1959 |
| Nearest Unigene: | Hs.1395 |
| Nearest Refseq: | NM_000399 |
| Nearest Ensembl: | ENSG00000122877 |
| Gene Name: | EGR2 |
| Gene Alias: | AT591|CHN1|CMT1D|CMT4E|KROX20 |
| Gene Description: | early growth response 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.12 |
| GC%: | 0.716418 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -94(GCCCATATATGG,-,0.00),-92(CCATATATGGAC,+,0.00) |
