Difference between revisions of "TSS:Hg 105222.1"
From referenceTSS
| Line 3: | Line 3: | ||
|MYOP= | |MYOP= | ||
|RCM4= | |RCM4= | ||
| − | |all_trans=ENST00000373675.3:0 | + | |all_trans=ENST00000358913.10:0 ENST00000373675.3:0 NR_045663:0 NM_032578:0 AK027343:0 BX647637:0 AL832002:3 AL834247:3 ENST00000613327.4:-48 NM_001256268:-48 BC142609:54 BC144333:164 BC144334:164 AF328296:-244 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=6 |
|end=68109507 | |end=68109507 | ||
|end_of_center_position=68109494 | |end_of_center_position=68109494 | ||
|entrez_id=84665 | |entrez_id=84665 | ||
|gc_percent=0.467662 | |gc_percent=0.467662 | ||
| − | |gene_alias=CMD1DD | + | |gene_alias=CMD1DD{{!}}CMH22{{!}}MYOP{{!}}NEM11{{!}}RCM4 |
|gene_description=myopalladin | |gene_description=myopalladin | ||
|gene_id=84665 | |gene_id=84665 | ||
| Line 22: | Line 22: | ||
|hgnc_mgi_id=HGNC:23246 | |hgnc_mgi_id=HGNC:23246 | ||
|nearest_ensembl=ENSG00000138347 | |nearest_ensembl=ENSG00000138347 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_045663 |
|nearest_refseq=NM_032578 | |nearest_refseq=NM_032578 | ||
|nearest_unigene=Hs.55205 | |nearest_unigene=Hs.55205 | ||
| − | |num_trans= | + | |num_trans=14 |
|species=human | |species=human | ||
|start=68109480 | |start=68109480 | ||
|start_of_center_position=68109493 | |start_of_center_position=68109493 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000373675.3 | + | |transcript_name=ENST00000358913.10 ENST00000373675.3 NR_045663 NM_032578 AK027343 BX647637 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_105222.1 | |tss_id=hg_105222.1 | ||
Revision as of 18:09, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 68109493 |
|---|---|
| End of the center position in the TSS region: | 68109494 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000358913.10 ENST00000373675.3 NR_045663 NM_032578 AK027343 BX647637 |
|---|---|
| Distance: | 0 |
| Num_trans: | 14 |
| All_trans: | ENST00000358913.10:0 ENST00000373675.3:0 NR_045663:0 NM_032578:0 AK027343:0 BX647637:0 AL832002:3 AL834247:3 ENST00000613327.4:-48 NM_001256268:-48 BC142609:54 BC144333:164 BC144334:164 AF328296:-244 |
TATA-Box annotation
| Distance to TSS: | 6 |
|---|---|
| Nearest PromoterID: | NR_045663 |
| Entrez ID: | 84665 |
| Nearest Unigene: | Hs.55205 |
| Nearest Refseq: | NM_032578 |
| Nearest Ensembl: | ENSG00000138347 |
| Gene Name: | myopalladin |
| Gene Alias: | CMD1DD|CMH22|MYOP|NEM11|RCM4 |
| Gene Description: | myopalladin |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.467662 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
