Difference between revisions of "TSS:Hg 105334.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=LF322612:121 MA558189:121 LF322611:252 MA558188:252 | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0 | |cpg_percent=0 | ||
| − | |distance= | + | |distance=121 |
| − | |distance_to_tss=- | + | |distance_to_tss=-17634 |
|end=69202709 | |end=69202709 | ||
|end_of_center_position=69202699 | |end_of_center_position=69202699 | ||
| Line 16: | Line 17: | ||
|nearest_refseq=NM_025130 | |nearest_refseq=NM_025130 | ||
|nearest_unigene=Hs.522988 | |nearest_unigene=Hs.522988 | ||
| − | |num_trans= | + | |num_trans=4 |
|species=human | |species=human | ||
|start=69202687 | |start=69202687 | ||
|start_of_center_position=69202698 | |start_of_center_position=69202698 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=49(GCCTTTATGGAA,+,0.00),85(TCTTTTATAGAC,+,0.00) |
| − | |transcript_name= | + | |transcript_name=LF322612 MA558189 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_105334.1 | |tss_id=hg_105334.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 18:11, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 69202698 |
|---|---|
| End of the center position in the TSS region: | 69202699 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF322612 MA558189 |
|---|---|
| Distance: | 121 |
| Num_trans: | 4 |
| All_trans: | LF322612:121 MA558189:121 LF322611:252 MA558188:252 |
TATA-Box annotation
| Distance to TSS: | -17634 |
|---|---|
| Nearest PromoterID: | NM_025130 |
| Entrez ID: | 80201 |
| Nearest Unigene: | Hs.522988 |
| Nearest Refseq: | NM_025130 |
| Nearest Ensembl: | ENSG00000156510 |
| Gene Name: | HKDC1 |
| Gene Alias: | - |
| Gene Description: | hexokinase domain containing 1 |
| Gene Type: | protein-coding |
| CpG%: | 0 |
| GC%: | 0.338308 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 49(GCCTTTATGGAA,+,0.00),85(TCTTTTATAGAC,+,0.00) |
