Difference between revisions of "TSS:Hg 105369.1"
From referenceTSS
| Line 3: | Line 3: | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| − | |distance= | + | |distance=NA |
| − | |distance_to_tss= | + | |distance_to_tss=94270 |
|end=69896177 | |end=69896177 | ||
|end_of_center_position=69896176 | |end_of_center_position=69896176 | ||
|entrez_id=1305 | |entrez_id=1305 | ||
|gc_percent=0.517413 | |gc_percent=0.517413 | ||
| − | |gene_alias=CMS19 | + | |gene_alias=CMS19{{!}}COLXIIIA1 |
|gene_description=collagen type XIII alpha 1 chain | |gene_description=collagen type XIII alpha 1 chain | ||
|gene_name=COL13A1 | |gene_name=COL13A1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000197467 | |nearest_ensembl=ENSG00000197467 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_080801 |
|nearest_refseq=NM_005203 | |nearest_refseq=NM_005203 | ||
|nearest_unigene=Hs.695934 | |nearest_unigene=Hs.695934 | ||
| Line 22: | Line 22: | ||
|start_of_center_position=69896175 | |start_of_center_position=69896175 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-33(CTCTTTAAAAGC,-,0.00),-32(TCTTTAAAAGCA,+,0.00) |
|transcript_name= | |transcript_name= | ||
|tss_classification=no | |tss_classification=no | ||
Latest revision as of 18:12, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 69896175 |
|---|---|
| End of the center position in the TSS region: | 69896176 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | 94270 |
|---|---|
| Nearest PromoterID: | NM_080801 |
| Entrez ID: | 1305 |
| Nearest Unigene: | Hs.695934 |
| Nearest Refseq: | NM_005203 |
| Nearest Ensembl: | ENSG00000197467 |
| Gene Name: | COL13A1 |
| Gene Alias: | CMS19|COLXIIIA1 |
| Gene Description: | collagen type XIII alpha 1 chain |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.517413 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -33(CTCTTTAAAAGC,-,0.00),-32(TCTTTAAAAGCA,+,0.00) |
