Difference between revisions of "TSS:Hg 105409.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|SPL= | |SPL= | ||
| − | |all_trans=AB384155:156 AF144638:156 | + | |all_trans=LF322576:112 MA558153:112 AB384155:156 KJ897928:156 AF144638:156 LF322577:-289 MA558154:-289 AK314615:-305 LF322578:-361 MA558155:-361 LF322579:-481 MA558156:-481 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| − | |distance= | + | |distance=112 |
|distance_to_tss=745 | |distance_to_tss=745 | ||
|end=70816698 | |end=70816698 | ||
| Line 10: | Line 10: | ||
|entrez_id=8879 | |entrez_id=8879 | ||
|gc_percent=0.492537 | |gc_percent=0.492537 | ||
| − | |gene_alias=S1PL | + | |gene_alias=NPHS14{{!}}S1PL{{!}}SPL |
|gene_description=sphingosine-1-phosphate lyase 1 | |gene_description=sphingosine-1-phosphate lyase 1 | ||
|gene_id=8879 | |gene_id=8879 | ||
| − | |gene_name= | + | |gene_name=SGPL1 |
|gene_source=HGNC:10817 | |gene_source=HGNC:10817 | ||
|gene_symbol=SGPL1 | |gene_symbol=SGPL1 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_003901 | |nearest_refseq=NM_003901 | ||
|nearest_unigene=Hs.499984 | |nearest_unigene=Hs.499984 | ||
| − | |num_trans= | + | |num_trans=12 |
|species=human | |species=human | ||
|start=70816688 | |start=70816688 | ||
|start_of_center_position=70816693 | |start_of_center_position=70816693 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=LF322576 MA558153 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_105409.1 | |tss_id=hg_105409.1 | ||
Latest revision as of 18:13, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 70816693 |
|---|---|
| End of the center position in the TSS region: | 70816694 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF322576 MA558153 |
|---|---|
| Distance: | 112 |
| Num_trans: | 12 |
| All_trans: | LF322576:112 MA558153:112 AB384155:156 KJ897928:156 AF144638:156 LF322577:-289 MA558154:-289 AK314615:-305 LF322578:-361 MA558155:-361 LF322579:-481 MA558156:-481 |
TATA-Box annotation
| Distance to TSS: | 745 |
|---|---|
| Nearest PromoterID: | NM_003901 |
| Entrez ID: | 8879 |
| Nearest Unigene: | Hs.499984 |
| Nearest Refseq: | NM_003901 |
| Nearest Ensembl: | ENSG00000166224 |
| Gene Name: | SGPL1 |
| Gene Alias: | NPHS14|S1PL|SPL |
| Gene Description: | sphingosine-1-phosphate lyase 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.492537 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
