Difference between revisions of "TSS:Hg 10545.1"
From referenceTSS
| Line 5: | Line 5: | ||
|NBG= | |NBG= | ||
|NBPF= | |NBPF= | ||
| − | |all_trans=ENST00000599069.5:0 ENST00000449853.2:0 NM_017940:0 | + | |all_trans=ENST00000599069.5:0 ENST00000449853.2:0 NM_017940:0 LP895741:0 BC093404:0 BC110431:0 AK055895:0 BC066930:0 BC010124:0 BC082236:0 ENST00000430580.6:21 ENST00000432949.5:21 AY894575:21 AK123260:251 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
| Line 14: | Line 14: | ||
|entrez_id=55672 | |entrez_id=55672 | ||
|gc_percent=0.711443 | |gc_percent=0.711443 | ||
| − | |gene_alias=AB13 | + | |gene_alias=AB13{{!}}AB14{{!}}AB23{{!}}AD2{{!}}NBG{{!}}NBPF |
| − | |gene_description= | + | |gene_description=NBPF member 1 |
|gene_id=55672 | |gene_id=55672 | ||
| − | |gene_name= | + | |gene_name=NBPF member 1 |
|gene_source=HGNC:26088 | |gene_source=HGNC:26088 | ||
|gene_symbol=NBPF1 | |gene_symbol=NBPF1 | ||
| Line 27: | Line 27: | ||
|nearest_refseq=NM_017940 | |nearest_refseq=NM_017940 | ||
|nearest_unigene=Hs.467587 | |nearest_unigene=Hs.467587 | ||
| − | |num_trans= | + | |num_trans=14 |
|species=human | |species=human | ||
|start=16613507 | |start=16613507 | ||
|start_of_center_position=16613558 | |start_of_center_position=16613558 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-83(GTCCCTTTAAGG,-,0.00),-81(CCCTTTAAGGCC,+,0.00),-80(CCTTTAAGGCCC,+,0.00) |
| − | |transcript_name=ENST00000599069.5 ENST00000449853.2 NM_017940 | + | |transcript_name=ENST00000599069.5 ENST00000449853.2 NM_017940 LP895741 BC093404 BC110431 AK055895 BC066930 BC010124 BC082236 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_10545.1 | |tss_id=hg_10545.1 | ||
Revision as of 18:14, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 16613558 |
|---|---|
| End of the center position in the TSS region: | 16613559 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000599069.5 ENST00000449853.2 NM_017940 LP895741 BC093404 BC110431 AK055895 BC066930 BC010124 BC082236 |
|---|---|
| Distance: | 0 |
| Num_trans: | 14 |
| All_trans: | ENST00000599069.5:0 ENST00000449853.2:0 NM_017940:0 LP895741:0 BC093404:0 BC110431:0 AK055895:0 BC066930:0 BC010124:0 BC082236:0 ENST00000430580.6:21 ENST00000432949.5:21 AY894575:21 AK123260:251 |
TATA-Box annotation
| Distance to TSS: | 46 |
|---|---|
| Nearest PromoterID: | NM_017940 |
| Entrez ID: | 55672 |
| Nearest Unigene: | Hs.467587 |
| Nearest Refseq: | NM_017940 |
| Nearest Ensembl: | ENSG00000219481 |
| Gene Name: | NBPF member 1 |
| Gene Alias: | AB13|AB14|AB23|AD2|NBG|NBPF |
| Gene Description: | NBPF member 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.711443 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -83(GTCCCTTTAAGG,-,0.00),-81(CCCTTTAAGGCC,+,0.00),-80(CCTTTAAGGCCC,+,0.00) |
