Difference between revisions of "TSS:Hg 105493.1"
From referenceTSS
| Line 2: | Line 2: | ||
|REDD-1= | |REDD-1= | ||
|REDD1= | |REDD1= | ||
| − | |all_trans=KJ894039:-117 AB587474:-118 AM392607:-120 DQ890984:-120 DQ894159:-120 | + | |all_trans=LF322513:-92 MA558090:-92 KJ894039:-117 AB587474:-118 AM392607:-120 DQ890984:-120 DQ894159:-120 LF322514:-203 MA558091:-203 BC000708:-311 AY090097:-331 BC015236:-388 AF335324:-397 BC007714:-402 ENST00000473155.2:-409 ENST00000681898.1:-409 ENST00000307365.4:-409 NM_019058:-409 AK000507:-409 ENST00000471240.2:-413 AL136668:-413 ENST00000491934.3:-414 LP764833:-414 LQ946190:-414 LF208755:-427 MA444332:-427 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
| − | |distance=- | + | |distance=-92 |
| − | |distance_to_tss= | + | |distance_to_tss=418 |
|end=72274352 | |end=72274352 | ||
|end_of_center_position=72274343 | |end_of_center_position=72274343 | ||
|entrez_id=54541 | |entrez_id=54541 | ||
|gc_percent=0.711443 | |gc_percent=0.711443 | ||
| − | |gene_alias=Dig2 | + | |gene_alias=Dig2{{!}}REDD-1{{!}}REDD1 |
|gene_description=DNA damage inducible transcript 4 | |gene_description=DNA damage inducible transcript 4 | ||
|gene_name=DDIT4 | |gene_name=DDIT4 | ||
| Line 19: | Line 19: | ||
|nearest_refseq=NM_019058 | |nearest_refseq=NM_019058 | ||
|nearest_unigene=Hs.744875 | |nearest_unigene=Hs.744875 | ||
| − | |num_trans= | + | |num_trans=26 |
|species=human | |species=human | ||
|start=72274332 | |start=72274332 | ||
|start_of_center_position=72274342 | |start_of_center_position=72274342 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=LF322513 MA558090 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_105493.1 | |tss_id=hg_105493.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 18:15, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 72274342 |
|---|---|
| End of the center position in the TSS region: | 72274343 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | LF322513 MA558090 |
|---|---|
| Distance: | -92 |
| Num_trans: | 26 |
| All_trans: | LF322513:-92 MA558090:-92 KJ894039:-117 AB587474:-118 AM392607:-120 DQ890984:-120 DQ894159:-120 LF322514:-203 MA558091:-203 BC000708:-311 AY090097:-331 BC015236:-388 AF335324:-397 BC007714:-402 ENST00000473155.2:-409 ENST00000681898.1:-409 ENST00000307365.4:-409 NM_019058:-409 AK000507:-409 ENST00000471240.2:-413 AL136668:-413 ENST00000491934.3:-414 LP764833:-414 LQ946190:-414 LF208755:-427 MA444332:-427 |
TATA-Box annotation
| Distance to TSS: | 418 |
|---|---|
| Nearest PromoterID: | NM_019058 |
| Entrez ID: | 54541 |
| Nearest Unigene: | Hs.744875 |
| Nearest Refseq: | NM_019058 |
| Nearest Ensembl: | ENSG00000168209 |
| Gene Name: | DDIT4 |
| Gene Alias: | Dig2|REDD-1|REDD1 |
| Gene Description: | DNA damage inducible transcript 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.711443 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
